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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3560 and Psest_3561 are separated by 107 nucleotides
Psest_3561 and Psest_3562 are separated by 16 nucleotides
Psest_3562 and Psest_3563 are separated by 3 nucleotides
Psest_3563 and Psest_3564 are separated by 8 nucleotides
Psest_3560: Psest_3560 - hypothetical protein, at 3,736,761 to 3,737,111
_3560
Psest_3561: Psest_3561 - Protein of unknown function (DUF2796)., at 3,737,219 to 3,737,836
_3561
Psest_3562: Psest_3562 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,737,853 to 3,738,560
_3562
Psest_3563: Psest_3563 - ABC-type transport system, involved in lipoprotein release, permease component, at 3,738,564 to 3,739,829
_3563
Psest_3564: Psest_3564 - Uncharacterized protein conserved in bacteria, at 3,739,838 to 3,740,350
_3564
Group
Condition
Psest
_3560
Psest
_3561
Psest
_3562
Psest
_3563
Psest
_3564
stress
nitrate 250 mM
N.D.
-0.5
-2.9
+0.7
-1.2
stress
Benzethonium chloride 0.01 mM
N.D.
-0.7
-0.4
-0.5
-0.6
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.4
-1.2
-0.5
-0.2
stress
nitrate 200 mM
N.D.
-0.7
-0.2
-0.8
-0.3
stress
Nickel (II) chloride 0.9 mM
N.D.
+0.1
-1.7
-0.2
-0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
-0.4
-0.9
-0.3
-0.3
stress
sodium fluoride 6.25 mM
N.D.
-0.8
+0.1
-0.4
-0.5
carbon source
Ethanol (C)
N.D.
+0.1
-1.4
-0.2
-0.2
stress
Cholin acetate 40 mM
N.D.
-0.7
-0.7
+0.1
-0.2
carbon source
propionate (C)
N.D.
-0.9
-0.5
+0.5
-0.5
stress
Cisplatin 0.0016 mg/ml
N.D.
-0.3
+0.3
-0.7
-0.7
RCH2 grown on a colony of N2F3
N.D.
+0.0
-1.6
-0.0
+0.2
radiation
Ionizing radiation, 0 Gy
N.D.
-0.1
-1.1
+0.3
-0.4
stress
sodium fluoride 8.5 mM
N.D.
-0.5
-0.4
+0.3
-0.7
RCH2 grown on a colony of 8R2A
N.D.
+0.4
-0.9
+0.5
-1.2
stress
Choline chloride 90 mM
N.D.
-0.7
-0.3
-0.5
+0.3
stress
A22 0.005 mg/ml
N.D.
-0.4
-0.6
+0.5
-0.5
nutrient
L-tyrosine
N.D.
+0.1
-0.7
+0.3
-0.6
nitrogen source
nitrite (N)
N.D.
-0.4
-0.6
+0.5
-0.4
stress
Def Carbenicillin 0.008 mg/ml
N.D.
-0.2
-0.6
+0.6
-0.5
stress
Aluminum chloride 0.3 mM
N.D.
-0.6
+0.4
+0.4
-0.5
RCH2 grown on a colony of N2C3
N.D.
+0.5
-1.0
+0.5
-0.1
RCH2 grown on a colony of Serratia
N.D.
+0.6
-0.3
+0.3
-0.5
stress
Benzalkonium Chloride 0.002 mg/ml
N.D.
+0.1
+0.9
+0.1
-0.9
stress
Vanillin 2 mM
N.D.
-0.4
+0.6
-0.5
+0.5
stress
Lactate-nitrate; anaerobic sample1
N.D.
+0.2
+1.0
-0.1
+0.4
nitrogen source
L-Citrulline (N)
N.D.
+0.8
-0.5
+0.7
+0.7
stress
Vanillin 2 mM
N.D.
+0.2
+1.4
+0.3
+0.2
stress
methylglyoxal 0.0016 vol%
N.D.
+0.6
+1.0
+0.8
-0.3
stress
Furfuryl Alcohol 0.05 vol%
N.D.
+0.8
+0.5
+1.6
-0.1
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