Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3530 and Psest_3531 are separated by 170 nucleotidesPsest_3531 and Psest_3532 are separated by 8 nucleotidesPsest_3532 and Psest_3533 overlap by 1 nucleotidesPsest_3533 and Psest_3534 overlap by 4 nucleotides Psest_3530: Psest_3530 - Copper binding periplasmic protein CusF., at 3,710,702 to 3,711,058 _3530 Psest_3531: Psest_3531 - Peptidase propeptide and YPEB domain., at 3,711,229 to 3,711,537 _3531 Psest_3532: Psest_3532 - Peptidase propeptide and YPEB domain., at 3,711,546 to 3,711,851 _3532 Psest_3533: Psest_3533 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,711,851 to 3,712,516 _3533 Psest_3534: Psest_3534 - Signal transduction histidine kinase, at 3,712,513 to 3,713,829 _3534
Group Condition Psest_3530 Psest_3531 Psest_3532 Psest_3533 Psest_3534
stress sodium fluoride 8.5 mM N.D. -4.7 +0.0 -0.3 N.D.
stress 1-ethyl-3-methylimidazolium acetate 40 mM N.D. -4.9 -0.2 +0.5 N.D.
stress Polymyxin B sulfate 0.0001 mg/ml N.D. -4.1 -0.8 +0.3 N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 N.D. -2.7 +0.1 -1.5 N.D.
RCH2 grown on a colony of N2F3 N.D. -3.7 +0.8 -0.8 N.D.
nitrogen source L-Glutamic (N) N.D. -3.0 -0.3 -0.3 N.D.
stress Bacitracin 0.25 mg/ml N.D. -3.4 -0.0 -0.1 N.D.
stress Thallium(I) acetate 0.08 mg/ml N.D. -3.6 -0.1 +0.2 N.D.
stress Cobalt chloride 0.07 mM N.D. -3.4 +0.2 -0.2 N.D.
stress Cisplatin 0.0016 mg/ml N.D. -3.4 +0.1 +0.0 N.D.
carbon source L-tyrosine (C) N.D. -2.7 -0.6 +0.1 N.D.
stress Cobalt chloride 0.05 mM N.D. -2.9 -0.2 -0.1 N.D.
anaerobic Nitrite/ lactate media with Nitrite 20mM N.D. -2.8 -0.1 -0.3 N.D.
vitamin No vitamins t1 N.D. -3.0 -0.1 +0.1 N.D.
stress Def Fusidic 0.064 mg/ml N.D. -2.6 -0.2 -0.1 N.D.
stress 1-ethyl-3-methylimidazolium acetate 40 mM N.D. -2.1 -0.4 -0.3 N.D.
stress Def Cephalothin 0.08 mg/ml N.D. -2.4 +0.1 -0.4 N.D.
nutrient L-Histidine N.D. -2.3 -0.4 +0.1 N.D.
RCH2 grown on a colony of Serratia N.D. -2.5 -0.2 +0.2 N.D.
vitamin No vitamins t2 N.D. -2.3 -0.3 +0.3 N.D.
temperature LB 30C timecourse1 timepoint 1 N.D. -2.2 +0.3 -0.4 N.D.
stress Furfuryl Alcohol 0.3 vol% N.D. -2.5 -0.0 +0.5 N.D.
stress Choline chloride 90 mM N.D. -2.2 -0.3 +0.7 N.D.
carbon source butyrate (C) N.D. +0.9 -1.6 -0.4 N.D.
stress Furfuryl Alcohol 0.05 vol% N.D. -2.1 +0.3 +1.0 N.D.
stress nitrate 250 mM N.D. +2.1 -2.3 -0.3 N.D.
nitrogen source L-Isoleucine (N) N.D. +1.4 -0.7 -0.7 N.D.
stress Nickel (II) chloride 0.8 mM N.D. +2.0 -1.5 +0.4 N.D.
stress benzoic 0.4 mg/ml N.D. +2.4 -0.7 -0.2 N.D.
lb LB N.D. +2.2 +0.3 -0.6 N.D.
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