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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_3516 and Psest_3517 are separated by 145 nucleotides
Psest_3517 and Psest_3518 are separated by 241 nucleotides
Psest_3518 and Psest_3519 are separated by 236 nucleotides
Psest_3519 and Psest_3520 are separated by 111 nucleotides
Psest_3516: Psest_3516 - Leucine dehydrogenase (EC 1.4.1.9)
(from data)
, at 3,692,956 to 3,694,050
_3516
Psest_3517: Psest_3517 - branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate
(from data)
, at 3,694,196 to 3,697,666
_3517
Psest_3518: Psest_3518 - Transcriptional regulators, at 3,697,908 to 3,698,378
_3518
Psest_3519: Psest_3519 - Uncharacterized conserved protein, at 3,698,615 to 3,699,031
_3519
Psest_3520: Psest_3520 - Short chain fatty acids transporter, at 3,699,143 to 3,700,483
_3520
Group
Condition
Psest
_3516
Psest
_3517
Psest
_3518
Psest
_3519
Psest
_3520
carbon source
L-Leucine (C)
-7.2
-5.9
-3.9
-0.3
-0.0
carbon source
L-Leucine (C)
-4.7
-5.5
-3.9
-0.4
-0.2
carbon source
L-Isoleucine (C)
-3.7
-5.7
-4.0
+0.1
-0.1
carbon source
L-Isoleucine (C)
-3.5
-5.6
-3.9
+0.2
-0.1
RCH2 grown on a colony of Serratia
-1.0
-0.7
-2.7
-1.4
-1.3
RCH2 grown on a colony of ecoli
-0.8
-1.9
-3.6
-0.3
+0.2
RCH2 grown on a colony of ecoli
-1.8
-2.1
-2.0
-0.0
+0.2
nitrogen source
L-Valine (N)
+0.2
-2.6
-2.3
-0.8
-0.2
RCH2 grown on a colony of N2F3
+0.5
+0.1
-3.6
-1.9
-0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.7
-0.6
-3.6
+0.7
-0.7
nitrogen source
L-Valine (N)
+0.6
-2.9
-1.9
-0.1
+0.0
nitrogen source
L-Isoleucine (N)
-0.2
-1.0
-2.2
-0.4
-0.2
nitrogen source
L-Isoleucine (N)
-0.7
-1.5
-2.0
+0.3
-0.0
stress
nitrate 200 mM
+0.2
+0.1
-1.6
-1.3
-1.0
RCH2 grown on a colony of N2A2
-0.3
-0.3
-1.1
-2.1
+0.3
stress
perchlorate 25 mM
-0.2
+0.1
-1.2
-1.2
-0.7
stress
Cobalt chloride 0.07 mM
-0.1
-0.2
-1.1
-1.7
-0.0
stress
nitrite 2.5 mM
+0.2
-0.1
-1.3
-1.2
-0.3
carbon source
L-tyrosine (C)
-0.4
+0.1
+0.2
-2.5
-0.1
RCH2 grown on a colony of N2A2
+0.6
-0.5
-2.1
-0.0
-0.3
stress
Paraquat dichloride 0.015 mg/ml
+0.4
+0.1
-2.0
-1.0
+0.2
stress
Benzethonium chloride 0.01 mM
+0.1
-0.1
-1.8
-0.4
+0.7
stress
Nalidixic 0.00390625 mg/ml
+0.1
+0.1
-2.3
+0.3
+0.3
carbon source
propionate (C)
-0.9
+0.0
+1.1
-0.9
-0.4
stress
nitrate 250 mM
+0.8
+0.0
+1.0
-2.8
+0.2
nutrient
Min media with glucose
+0.6
+0.1
-1.6
+0.6
-0.1
RCH2 grown on a colony of Serratia
-1.0
-1.2
+1.6
+0.3
-0.2
lb
LB
+0.2
+0.2
+2.1
-1.1
-0.6
stress
Paraquat dichloride 0.015 mg/ml
-0.5
-0.1
+2.2
+0.2
-0.2
stress
acetate 80 mM
+0.1
+0.2
+1.8
+1.1
+0.2
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