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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3500 and Psest_3501 are separated by 71 nucleotides
Psest_3501 and Psest_3502 are separated by 53 nucleotides
Psest_3502 and Psest_3503 are separated by 105 nucleotides
Psest_3503 and Psest_3504 are separated by 98 nucleotides
Psest_3500: Psest_3500 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 3,672,216 to 3,672,770
_3500
Psest_3501: Psest_3501 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 3,672,842 to 3,673,762
_3501
Psest_3502: Psest_3502 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 3,673,816 to 3,675,048
_3502
Psest_3503: Psest_3503 - hypothetical protein, at 3,675,154 to 3,677,052
_3503
Psest_3504: Psest_3504 - Predicted acyltransferases, at 3,677,151 to 3,678,218
_3504
Group
Condition
Psest
_3500
Psest
_3501
Psest
_3502
Psest
_3503
Psest
_3504
nitrogen source
L-Citrulline (N)
-0.7
-0.3
-1.6
-0.1
-0.2
nitrogen source
L-Isoleucine (N)
-0.3
-0.6
-0.9
-0.6
-0.2
carbon source
RCH2 defined media
-0.2
-0.0
-2.2
-0.1
+0.1
nitrogen source
L-Citrulline (N)
-0.4
+0.2
-1.8
-0.1
-0.1
stress
Def Phosphomycin 0.125 mg/ml
-0.1
-0.4
-1.6
-0.1
-0.1
lb
LB
-0.5
-0.1
-1.1
-0.2
+0.1
stress
Carbenicillin 0.0065 mg/ml
-0.9
-0.1
-0.7
-0.4
+0.1
nitrogen source
nitrite (N)
+0.3
-0.3
-1.4
+0.1
-0.5
stress
Cisplatin 0.0016 mg/ml
-0.4
-0.1
-1.4
+0.3
-0.0
stress
Cephalothin 0.04 mg/ml
-1.1
+0.1
+0.2
+0.1
-0.7
nutrient
L-tyrosine
+0.4
-0.1
-1.6
-0.1
+0.1
temperature
LB 30C timecourse1 timepoint 1
-0.1
+0.3
-1.6
+0.3
+0.0
stress
Furfuryl Alcohol 0.05 vol%
-0.6
-0.7
-0.4
+0.6
+0.0
stress
Def Carbenicillin 0.008 mg/ml
+0.0
+0.5
-0.5
-0.0
-1.0
stress
Fusidic 0.016 mg/ml
+0.3
+0.3
-0.9
+0.1
-0.5
stress
D-Cycloserine 0.032 mg/ml
+0.6
-0.2
-1.1
+0.1
-0.1
RCH2 grown on a colony of N2A2
+0.7
+0.2
-1.3
-0.1
+0.0
stress
Benzethonium chloride 0.01 mM
-0.7
+0.3
+0.5
-0.4
-0.1
stress
nitrite 2.5 mM
+0.5
-0.5
-0.6
+0.1
+0.2
stress
Nalidixic 0.00390625 mg/ml
+0.7
-0.3
+0.5
-0.3
-0.3
stress
Choline chloride 90 mM
-0.6
+0.1
+1.1
-0.1
+0.1
stress
Thallium(I) acetate 0.08 mg/ml
-0.8
+0.0
+0.9
+0.3
+0.3
stress
Thallium(I) acetate 0.09 mg/ml
-0.3
-0.2
+1.4
+0.2
-0.0
nitrogen source
Parabanic Acid (N)
+0.0
-0.3
+1.6
+0.0
-0.1
stress
Choline chloride 90 mM
+0.0
+0.1
+1.2
-0.3
+0.4
stress
L-Lysine 200 mM
+0.4
-0.5
+1.3
+0.1
+0.1
anaerobic
nitrate reduction - anaerobic
+0.6
+0.3
+0.7
+0.2
-0.4
stress
Lactate-nitrate; anaerobic; copper stress sample2
+0.6
+0.3
+0.6
+0.2
-0.3
stress
Choline Lysine 20 mM
+0.1
+0.4
+1.4
-0.0
+0.1
stress
Phosphomycin 0.012 mg/ml
+0.4
+0.2
+1.0
+0.4
+0.4
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