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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0341 and Psest_0342 are separated by 24 nucleotides
Psest_0342 and Psest_0343 overlap by 4 nucleotides
Psest_0343 and Psest_0344 are separated by 135 nucleotides
Psest_0344 and Psest_0345 are separated by 181 nucleotides
Psest_0341: Psest_0341 - flavoprotein, HI0933 family, at 362,768 to 363,952
_0341
Psest_0342: Psest_0342 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 363,977 to 364,843
_0342
Psest_0343: Psest_0343 - hypothetical membrane protein, TIGR01666, at 364,840 to 367,038
_0343
Psest_0344: Psest_0344 - Superfamily II DNA and RNA helicases, at 367,174 to 368,553
_0344
Psest_0345: Psest_0345 - Uncharacterized protein conserved in archaea, at 368,735 to 369,244
_0345
Group
Condition
Psest
_0341
Psest
_0342
Psest
_0343
Psest
_0344
Psest
_0345
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
-0.1
-1.0
-0.5
-1.2
stress
nitrate 250 mM
-0.1
-0.5
-0.2
-0.6
-1.0
stress
sodium fluoride 6.25 mM
+0.1
-0.1
-0.7
-0.3
-0.4
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
-0.5
+0.2
-0.3
-0.9
stress
Cobalt chloride 0.06 mM
+0.0
-0.2
+0.0
-0.9
-0.3
stress
nitrate 200 mM
-0.1
+0.2
-0.4
-0.7
-0.1
temperature
LB 26C sample1
+0.2
-0.1
-0.4
-0.5
-0.4
stress
Def Chloride 400 mM
+0.1
+0.0
-0.1
-0.6
-0.5
RCH2 grown on a colony of N2C3
-0.2
+0.1
-0.4
-0.5
+0.3
stress
Chloride 200 mM
+0.4
-0.1
-0.3
-0.6
+0.1
stress
Nalidixic 0.00390625 mg/ml
-0.2
-0.2
+0.3
+0.3
-0.5
anaerobic
nitrate reduction - anaerobic
+0.4
-0.4
+0.2
-0.1
-0.4
stress
Cephalothin 0.04 mg/ml
+0.4
-0.5
+0.5
-0.3
-0.4
stress
Fusidic 0.016 mg/ml
+0.5
-0.5
+0.3
-0.1
-0.4
RCH2 grown on a colony of N2F3
-0.1
+0.0
-0.7
+0.7
+0.2
stress
Gentamicin 0.0016 mg/ml
+0.5
-0.3
+0.3
-0.1
-0.3
carbon source
propionate (C)
-0.7
+0.2
+0.4
+0.6
-0.2
carbon source
propionate (C)
-0.2
+0.7
+0.5
-0.6
-0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.7
-0.3
+0.2
+0.1
-0.3
carbon source
RCH2 defined media
+0.3
-0.3
+0.7
-0.1
-0.2
carbon source
butyrate (C)
+0.6
-0.2
+0.3
-0.2
+0.2
stress
Carbenicillin 0.008 mg/ml
-0.4
+0.0
+0.1
+0.7
+0.4
stress
Def Carbenicillin 0.008 mg/ml
+0.3
+0.0
+1.1
-0.1
-0.4
stress
Choline Lysine 20 mM
+0.3
+0.3
+0.5
+0.2
+0.2
stress
Choline Lysine 20 mM
+0.3
+0.1
+0.6
+0.2
+0.2
nitrogen source
nitrite (N)
+0.3
-0.2
+0.6
+0.7
-0.1
lb
LB
+0.4
+0.4
+0.4
+0.2
+0.3
stress
Vanillin 2 mM
+0.2
+0.3
+0.3
+0.5
+0.4
stress
Def Carbenicillin 0.02 mg/ml
+0.1
+0.3
+0.6
+0.6
+0.4
stress
Furfuryl Alcohol 0.05 vol%
+0.3
+0.5
-0.2
+1.0
+0.8
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