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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3462 and Psest_3463 are separated by 2 nucleotides
Psest_3463 and Psest_3464 are separated by 81 nucleotides
Psest_3464 and Psest_3465 overlap by 11 nucleotides
Psest_3465 and Psest_3466 are separated by 108 nucleotides
Psest_3462: Psest_3462 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 3,632,649 to 3,633,368
_3462
Psest_3463: Psest_3463 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 3,633,371 to 3,634,048
_3463
Psest_3464: Psest_3464 - Signal transduction histidine kinase, at 3,634,130 to 3,635,407
_3464
Psest_3465: Psest_3465 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,635,397 to 3,636,080
_3465
Psest_3466: Psest_3466 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 3,636,189 to 3,638,147
_3466
Group
Condition
Psest
_3462
Psest
_3463
Psest
_3464
Psest
_3465
Psest
_3466
stress
Aluminum chloride 0.3 mM
-3.9
-3.3
-1.5
-3.3
-0.6
stress
Aluminum chloride 0.3 mM
-2.7
-2.0
-1.5
-3.2
-0.6
stress
Def Vancomycin 0.008 mg/ml
-0.3
+0.1
-1.8
-0.0
+0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.9
-0.0
-2.5
+0.4
-0.5
stress
Thallium(I) acetate 0.08 mg/ml
-1.0
-0.3
+0.0
-0.5
+0.3
stress
Nalidixic 0.00390625 mg/ml
+0.3
-0.4
-1.0
-0.6
+0.3
RCH2 grown on a colony of N2C3
-1.1
-0.1
+0.4
-0.8
+0.3
RCH2 grown on a colony of Serratia
-0.8
-0.4
-0.2
+0.4
-0.2
stress
Def Vancomycin 0.016 mg/ml
+0.2
+0.1
-1.6
+0.3
+0.1
stress
Def methylglyoxal 0.01 vol%
+0.4
-0.1
-1.2
+0.4
-0.1
stress
Def Doxycycline hyclate 0.0002 mg/ml
+0.6
+0.0
-1.4
+0.3
-0.1
stress
Def Cephalothin 0.08 mg/ml
+0.2
+0.4
-1.6
+0.4
+0.2
stress
Def Nalidixic 0.0005 mg/ml
+0.2
+0.4
-1.4
+0.4
+0.1
stress
Def Cephalothin 0.04 mg/ml
+0.4
+0.1
-1.1
+0.4
-0.0
stress
Bacitracin 0.25 mg/ml
+0.2
+0.2
-0.7
+0.6
-0.3
stress
Nalidixic 0.00390625 mg/ml
+0.6
+0.1
-0.9
+0.2
+0.1
carbon source
L-tyrosine (C)
+0.1
-0.3
+0.8
-0.6
+0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.2
+0.6
-1.5
+0.6
-0.1
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.8
+0.3
-0.5
+0.3
-0.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+1.0
+0.2
-0.4
+0.3
-0.3
stress
Cephalothin 0.04 mg/ml
+1.1
+0.1
-0.6
+0.5
-0.1
stress
Def Nalidixic 0.001 mg/ml
+0.8
+0.7
-1.5
+0.9
+0.3
stress
Chlorate 75 mM
+0.1
+0.3
-0.5
+1.1
+0.5
RCH2 grown on a colony of N2A2
+0.5
+0.9
-0.0
-0.2
+0.3
stress
Lactate-nitrate; anaerobic; cadmium stress sample2
+1.0
-0.2
+0.4
+0.3
+0.2
carbon source
L-tyrosine (C)
-0.1
-0.1
+1.1
+0.7
+0.1
stress
Lactate-nitrate; anaerobic; nickel stress sample2
+0.4
-0.3
+0.4
+0.9
+0.4
stress
Def Benzethonium chloride 0.008 mM
+1.1
+0.8
-0.6
+0.9
-0.1
stress
Def Neomycin 0.0008 mg/ml
-0.7
-1.3
+5.5
-0.7
-0.3
stress
nitrate 250 mM
+0.9
+0.7
+1.1
+0.5
+0.1
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