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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_3456 and Psest_3457 overlap by 8 nucleotides
Psest_3457 and Psest_3458 overlap by 4 nucleotides
Psest_3458 and Psest_3459 are separated by 92 nucleotides
Psest_3459 and Psest_3460 are separated by 13 nucleotides
Psest_3456: Psest_3456 - RNA polymerase sigma factor, sigma-70 family, at 3,628,078 to 3,628,638
_3456
Psest_3457: Psest_3457 - hypothetical protein, at 3,628,631 to 3,629,056
_3457
Psest_3458: Psest_3458 - hypothetical protein, at 3,629,053 to 3,629,517
_3458
Psest_3459: Psest_3459 - hypothetical protein, at 3,629,610 to 3,630,092
_3459
Psest_3460: Psest_3460 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 3,630,106 to 3,632,232
_3460
Group
Condition
Psest
_3456
Psest
_3457
Psest
_3458
Psest
_3459
Psest
_3460
stress
Nalidixic 0.00390625 mg/ml
-4.7
N.D.
-0.7
+0.7
+0.2
stress
Def A22 0.015 mg/ml
-1.3
N.D.
-1.7
-0.5
-0.7
stress
Choline chloride 90 mM
-1.4
N.D.
-2.9
+0.0
+0.0
stress
Paraquat dichloride 0.015 mg/ml
-1.0
N.D.
-2.9
-0.4
+0.2
stress
nitrite 2.5 mM
+0.7
N.D.
-3.6
-0.9
-0.2
RCH2 grown on a colony of 8R2A
-3.3
N.D.
-0.9
-0.0
+0.4
stress
nitrate 200 mM
-0.9
N.D.
-3.3
+0.4
+0.2
nitrogen source
L-Citrulline (N)
-2.2
N.D.
-1.4
+0.1
-0.1
carbon source
Glucose defined media
-1.1
N.D.
-0.8
-1.5
+0.1
stress
Choline Lysine 20 mM
+0.2
N.D.
-3.6
+0.1
+0.0
temperature
LB 30C timecourse2 timepoint 2
-1.9
N.D.
-0.6
-0.9
+0.3
stress
L-Lysine 200 mM
-1.5
N.D.
-2.1
+0.2
+0.2
RCH2 grown on a colony of Serratia
-2.1
N.D.
-1.5
+0.4
+0.3
stress
nitrite 2.5 mM
+0.8
N.D.
-2.3
-1.1
-0.1
stress
Def Phosphomycin 0.125 mg/ml
-2.4
N.D.
+0.2
+0.3
-0.8
radiation
Ionizing radiation, 319.06 Gy,
-3.0
N.D.
-0.0
+0.4
-0.0
carbon source
butyrate (C)
-0.0
N.D.
-3.0
+0.4
+0.1
stress
Def Chlorate 20 mM
-2.6
N.D.
+0.7
-0.1
+0.1
stress
Def Chlorate 40 mM
-2.9
N.D.
+0.9
-0.0
+0.2
carbon source
butyrate (C)
+0.9
N.D.
-2.5
+0.0
-0.1
stress
A22 0.005 mg/ml
-2.6
N.D.
-0.2
+1.3
-0.1
stress
nitrate 250 mM
-2.2
N.D.
-0.7
+1.1
+0.4
temperature
LB 30C timecourse2 timepoint 1
-2.5
N.D.
-0.1
+0.7
+0.5
stress
D-Cycloserine 0.032 mg/ml
+1.3
N.D.
-1.6
-0.6
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
-2.2
N.D.
+0.3
+0.6
+0.6
stress
Gentamicin 0.0016 mg/ml
+1.3
N.D.
-1.0
+0.8
+0.4
stress
Fusidic 0.016 mg/ml
+1.9
N.D.
-0.9
+2.0
+0.4
carbon source
propionate (C)
+1.6
N.D.
+2.1
-0.2
+0.1
stress
Chlorate 75 mM
+0.9
N.D.
+1.0
+2.1
+0.8
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.5
N.D.
+2.4
+0.7
+0.4
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