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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3446 and Psest_3447 are separated by 198 nucleotides
Psest_3447 and Psest_3448 overlap by 8 nucleotides
Psest_3448 and Psest_3449 are separated by 72 nucleotides
Psest_3449 and Psest_3450 are separated by 131 nucleotides
Psest_3446: Psest_3446 - Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs, at 3,618,108 to 3,618,620
_3446
Psest_3447: Psest_3447 - Uncharacterized MobA-related protein, at 3,618,819 to 3,619,409
_3447
Psest_3448: Psest_3448 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 3,619,402 to 3,620,376
_3448
Psest_3449: Psest_3449 - DJ-1 family protein, at 3,620,449 to 3,621,015
_3449
Psest_3450: Psest_3450 - Permeases, at 3,621,147 to 3,622,442
_3450
Group
Condition
Psest
_3446
Psest
_3447
Psest
_3448
Psest
_3449
Psest
_3450
nitrogen source
L-Isoleucine (N)
N.D.
-1.2
-0.4
-2.5
-1.0
stress
Def Phosphomycin 0.125 mg/ml
N.D.
-0.8
-1.4
-2.4
-0.3
stress
5-Hydroxymethylfurfural 5 mM
N.D.
-1.3
-0.2
-1.6
-0.6
lb
LB
N.D.
-0.2
-0.1
-2.6
-0.6
stress
sodium fluoride 6.25 mM
N.D.
-0.6
-0.1
-2.2
-0.6
vitamin
With vitamins t1
N.D.
-0.8
-0.1
-2.1
-0.2
vitamin
With vitamins t2
N.D.
-1.0
-0.3
-1.1
-0.7
stress
Spectinomycin 0.00625 mg/ml
N.D.
-1.7
+0.1
-0.7
-0.6
stress
Def Cephalothin 0.08 mg/ml
N.D.
+0.1
-0.4
-1.7
-0.7
stress
Nalidixic 0.00390625 mg/ml
N.D.
-2.1
-0.0
-0.7
+0.1
lb
LB
N.D.
-0.6
-0.2
-2.1
+0.2
stress
Cisplatin 0.003 mg/ml
N.D.
-1.4
-0.3
-1.1
+0.1
stress
Carbenicillin 0.0065 mg/ml
N.D.
-2.2
-0.3
+0.6
-0.5
stress
Def Nalidixic 0.0005 mg/ml
N.D.
-0.8
+0.3
-1.6
-0.1
stress
A22 0.005 mg/ml
N.D.
+0.5
-0.7
-0.9
-0.6
stress
5-Hydroxymethylfurfural 5 mM
N.D.
-0.7
+0.6
-1.1
-0.3
stress
Def Vancomycin 0.008 mg/ml
N.D.
+0.8
-0.3
-1.3
-0.5
RCH2 grown on a colony of N2C3
N.D.
-1.2
-0.1
+0.9
-0.8
stress
Choline chloride 90 mM
N.D.
+0.7
-0.1
-2.2
+0.5
stress
D-Cycloserine 0.032 mg/ml
N.D.
+1.7
-0.1
-0.8
-0.5
nitrogen source
L-Glutamine (N)
N.D.
+1.2
+0.3
-1.2
+0.4
RCH2 grown on a colony of Serratia
N.D.
+1.0
+0.9
-0.8
-0.2
stress
Def sodium fluoride 25 mM
N.D.
+1.2
-0.8
+0.7
-0.1
stress
Furfuryl Alcohol 0.05 vol%
N.D.
-1.0
+0.4
+2.5
-0.6
stress
nitrate 250 mM
N.D.
+0.7
+0.5
-0.8
+0.9
stress
Gentamicin 0.0016 mg/ml
N.D.
+2.0
+0.7
-1.5
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
N.D.
+1.4
+0.1
+1.0
+0.4
stress
Benzethonium chloride 0.01 mM
N.D.
+1.4
+0.3
+0.8
+0.4
RCH2 grown on a colony of 8R2A
N.D.
+1.5
+0.3
+0.7
+0.4
stress
Def Lomefloxacin 0.00004 mM
N.D.
+1.7
+0.5
+0.8
+0.2
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