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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3443 and Psest_3444 are separated by 128 nucleotides
Psest_3444 and Psest_3445 overlap by 4 nucleotides
Psest_3445 and Psest_3446 overlap by 4 nucleotides
Psest_3446 and Psest_3447 are separated by 198 nucleotides
Psest_3443: Psest_3443 - Predicted acyltransferases, at 3,613,560 to 3,614,798
_3443
Psest_3444: Psest_3444 - Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs, at 3,614,927 to 3,617,128
_3444
Psest_3445: Psest_3445 - Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs, at 3,617,125 to 3,618,111
_3445
Psest_3446: Psest_3446 - Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs, at 3,618,108 to 3,618,620
_3446
Psest_3447: Psest_3447 - Uncharacterized MobA-related protein, at 3,618,819 to 3,619,409
_3447
Group
Condition
Psest
_3443
Psest
_3444
Psest
_3445
Psest
_3446
Psest
_3447
stress
Def Chloride 400 mM
-0.4
-0.4
-0.4
N.D.
-1.3
stress
Nalidixic 0.00390625 mg/ml
-0.3
+0.1
-0.1
N.D.
-2.1
stress
Carbenicillin 0.0065 mg/ml
+0.0
-0.1
-0.1
N.D.
-2.2
nitrogen source
L-Isoleucine (N)
-0.0
-0.1
-0.9
N.D.
-1.2
stress
acetate 80 mM
-0.7
+0.1
-0.3
N.D.
-1.2
stress
Cisplatin 0.003 mg/ml
-0.3
-0.2
-0.2
N.D.
-1.4
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
-0.5
-0.6
N.D.
-0.7
anaerobic
Nitrate/ lactate media with Nitrate 20mM
+0.0
+0.0
-0.1
N.D.
-1.8
stress
Spectinomycin 0.00625 mg/ml
+0.2
-0.1
-0.1
N.D.
-1.7
temperature
Glucose defined media 37C sample1
+0.3
-0.0
-0.1
N.D.
-1.7
stress
syringaldehyde 4 mM
-0.2
-0.1
+0.3
N.D.
-1.5
RCH2 grown on a colony of Serratia
+0.4
+0.1
-0.5
N.D.
-1.5
carbon source
L-Proline (C)
-0.1
+0.2
+0.5
N.D.
-1.3
nitrogen source
nitrite (N)
-0.2
+0.9
-0.4
N.D.
-1.0
RCH2 grown on a colony of N2C3
+0.4
+0.3
-0.0
N.D.
-1.2
stress
Cephalothin 0.04 mg/ml
+0.1
+0.6
+0.0
N.D.
-1.2
stress
Def Chlorate 40 mM
-0.5
-0.2
-0.7
N.D.
+1.2
stress
Furfuryl Alcohol 0.05 vol%
+0.3
+0.1
+0.7
N.D.
-1.0
stress
Def sodium fluoride 25 mM
-0.3
-0.3
-0.1
N.D.
+1.2
stress
Doxycycline hyclate 0.0002 mg/ml
-0.3
-0.4
+0.1
N.D.
+1.4
stress
A22 0.002 mg/ml
-0.3
+0.2
+0.1
N.D.
+1.3
stress
Benzethonium chloride 0.01 mM
-0.1
+0.3
+0.1
N.D.
+1.4
nitrogen source
L-Proline (N)
-0.0
+0.0
+0.2
N.D.
+1.6
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.0
+0.6
+0.7
N.D.
+0.7
RCH2 grown on a colony of 8R2A
+0.5
+0.0
-0.1
N.D.
+1.5
stress
Lactate-nitrate; anaerobic; nickel stress sample3
+0.2
+0.3
+0.0
N.D.
+1.5
stress
Def Lomefloxacin 0.00004 mM
+0.1
+0.0
+0.3
N.D.
+1.7
stress
Def Carbenicillin 0.02 mg/ml
-0.1
+0.2
+0.6
N.D.
+1.3
nitrogen source
nitrate (N)
+0.1
+0.1
+0.3
N.D.
+1.6
stress
Gentamicin 0.0016 mg/ml
+0.1
+0.5
+0.5
N.D.
+2.0
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