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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3431 and Psest_3432 overlap by 4 nucleotides
Psest_3432 and Psest_3433 are separated by 147 nucleotides
Psest_3433 and Psest_3434 are separated by 159 nucleotides
Psest_3434 and Psest_3435 are separated by 15 nucleotides
Psest_3431: Psest_3431 - Phage integrase family., at 3,598,952 to 3,600,538
_3431
Psest_3432: Psest_3432 - Site-specific recombinase XerD, at 3,600,535 to 3,601,800
_3432
Psest_3433: Psest_3433 - ATP-binding cassette protein, ChvD family, at 3,601,948 to 3,603,642
_3433
Psest_3434: Psest_3434 - Serine phosphatase RsbU, regulator of sigma subunit, at 3,603,802 to 3,605,793
_3434
Psest_3435: Psest_3435 - hypothetical protein, at 3,605,809 to 3,606,351
_3435
Group
Condition
Psest
_3431
Psest
_3432
Psest
_3433
Psest
_3434
Psest
_3435
stress
Gentamicin 0.0016 mg/ml
-0.8
-0.7
-1.9
+0.1
-1.3
stress
Chlorate 75 mM
-1.2
-0.5
+0.2
-0.3
-1.8
stress
Choline chloride 90 mM
-0.2
-0.2
-1.4
-0.1
-0.4
stress
Choline Lysine 20 mM
-0.3
-0.4
-0.9
+0.0
-0.8
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
-0.4
-0.2
-1.1
+0.0
-0.4
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.2
-0.1
-1.4
-0.0
-0.3
stress
nitrate 250 mM
-0.5
-0.5
-0.1
+0.4
-1.2
carbon source
L-Proline (C)
-0.4
-0.3
-0.9
-0.2
-0.1
carbon source
propionate (C)
+0.1
-0.1
-1.2
-0.1
-0.6
stress
Benzethonium chloride 0.0125 mM
-0.3
-0.4
-0.2
-0.0
-0.9
stress
Choline chloride 90 mM
+0.0
-0.4
-1.0
-0.1
-0.3
stress
Def Benzethonium chloride 0.008 mM
-0.4
-0.4
-0.3
+0.4
-0.7
carbon source
propionate (C)
-0.2
-0.2
-1.0
-0.1
+0.4
stress
Def Carbenicillin 0.008 mg/ml
-0.8
-0.4
+0.9
+0.2
-1.1
stress
Fusidic 0.016 mg/ml
-0.7
-0.6
+0.1
+0.6
-0.2
carbon source
L-Lactate (C)
-0.5
-0.3
+0.3
+0.3
-0.5
stress
Nickel (II) chloride 0.9 mM
+0.2
+0.0
+0.4
-0.1
-1.1
carbon source
RCH2 defined media
-0.4
-0.3
+0.5
+0.2
-0.5
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.5
-0.2
+0.5
+0.4
-0.6
stress
Cephalothin 0.04 mg/ml
-0.6
-0.7
+0.4
+0.7
-0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.0
-0.7
-0.8
+0.6
+0.6
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.4
-0.2
-0.5
+1.1
-0.3
stress
Cobalt chloride 0.05 mM
-0.0
+0.0
+0.8
-0.1
-0.9
carbon source
butyrate (C)
-0.5
-0.2
+0.3
+0.6
+0.3
vitamin
No vitamins t1
+0.2
-0.1
-0.2
+0.1
+1.2
stress
Paraquat dichloride 0.015 mg/ml
+0.3
+0.2
-0.1
+0.3
+1.0
carbon source
L-Glutamine (C)
+0.2
+0.0
+1.0
+0.5
+0.2
carbon source
L-Glutamine (C)
+0.1
+0.3
+1.0
+0.5
+0.1
carbon source
L-Glutamine (C)
+0.1
+0.2
+1.0
+0.7
+0.2
nitrogen source
L-Isoleucine (N)
+0.1
+0.3
+0.7
+0.8
+0.8
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