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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3417 and Psest_3418 are separated by 7 nucleotides
Psest_3418 and Psest_3419 are separated by 188 nucleotides
Psest_3419 and Psest_3420 are separated by 2 nucleotides
Psest_3420 and Psest_3421 are separated by 248 nucleotides
Psest_3417: Psest_3417 - hypothetical protein, at 3,587,264 to 3,587,779
_3417
Psest_3418: Psest_3418 - tRNA nucleotidyltransferase (CCA-adding enzyme), at 3,587,787 to 3,588,752
_3418
Psest_3419: Psest_3419 - Predicted transcriptional regulators, at 3,588,941 to 3,589,264
_3419
Psest_3420: Psest_3420 - Predicted Zn peptidase, at 3,589,267 to 3,590,157
_3420
Psest_3421: Psest_3421 - hypothetical protein, at 3,590,406 to 3,590,579
_3421
Group
Condition
Psest
_3417
Psest
_3418
Psest
_3419
Psest
_3420
Psest
_3421
stress
Def Carbenicillin 0.008 mg/ml
-0.6
-0.9
-2.3
-1.2
+0.3
stress
Chlorate 75 mM
-0.7
-0.4
-0.7
-0.8
-2.0
stress
Def Chloride 400 mM
+0.0
+0.2
-4.1
+0.1
-0.8
temperature
LB 30C timecourse1 timepoint 3
-0.5
-0.6
-1.4
-0.6
-0.5
stress
Def Carbenicillin 0.02 mg/ml
-0.9
-0.8
-1.3
-0.4
-0.1
metal limitation
Aerobic, no iron sample3
-0.6
-0.6
+0.3
-1.4
-0.5
carbon source
butyrate (C)
-0.0
-0.0
-2.1
-0.3
-0.2
stress
Gentamicin 0.0016 mg/ml
-0.3
-0.5
-1.0
-0.9
-0.0
metal limitation
Aerobic, no iron sample2
-0.5
-0.6
+0.4
-1.5
-0.3
temperature
LB 30C timecourse2 timepoint 1
-0.3
-0.4
-1.0
-0.5
-0.4
metal limitation
Aerobic, no iron sample1
-0.5
-0.7
+0.2
-1.4
-0.2
metal limitation
Lactate-nitrite; anaerobic; sample3
-0.3
-0.4
-1.1
-0.3
-0.3
RCH2 grown on a colony of N2F3
-0.0
-0.7
-0.9
+0.0
-0.9
carbon source
RCH2 defined media
-0.3
-0.4
-1.4
-0.7
+0.4
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.3
-0.4
-1.5
-0.5
+0.5
nitrogen source
L-Glutamic (N)
+0.1
-0.0
-0.6
+0.1
-1.8
stress
Furfuryl Alcohol 0.05 vol%
-0.5
-0.5
-0.7
+0.2
-0.6
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-0.5
-0.2
-1.4
-0.4
+0.5
stress
Vanillin 2 mM
+0.3
-0.1
-1.1
+0.3
-1.4
stress
D-Cycloserine 0.032 mg/ml
+0.4
+0.2
-0.8
-0.3
-1.2
stress
Fusidic 0.016 mg/ml
-0.3
-0.2
-0.6
-0.9
+0.4
stress
Cephalothin 0.04 mg/ml
-0.3
-0.3
-0.4
-0.9
+0.6
stress
5-Hydroxymethylfurfural 5 mM
+0.4
+0.1
-1.1
+0.2
-0.7
stress
Def Benzethonium chloride 0.008 mM
-0.2
-0.3
-0.5
-0.5
+0.9
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.3
+0.4
-0.9
-0.4
+0.5
stress
2-Furfuraldehyde 0.05 vol%
+0.2
+0.1
-1.1
+0.5
+0.6
stress
nitrate 200 mM
+0.2
-0.0
-0.8
+0.3
+1.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.4
+0.4
-0.3
-0.6
+1.0
stress
Benzethonium chloride 0.01 mM
+0.7
+0.4
+0.7
+0.1
-0.5
nitrogen source
L-Isoleucine (N)
+0.5
+0.6
-0.6
+0.6
+0.9
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