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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3407 and Psest_3408 are separated by 31 nucleotides
Psest_3408 and Psest_3409 are separated by 104 nucleotides
Psest_3409 and Psest_3410 overlap by 4 nucleotides
Psest_3410 and Psest_3411 are separated by 118 nucleotides
Psest_3407: Psest_3407 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 3,576,550 to 3,579,753
_3407
Psest_3408: Psest_3408 - Predicted transcriptional regulators, at 3,579,785 to 3,580,006
_3408
Psest_3409: Psest_3409 - hypothetical protein, at 3,580,111 to 3,580,698
_3409
Psest_3410: Psest_3410 - DNA or RNA helicases of superfamily II, at 3,580,695 to 3,582,089
_3410
Psest_3411: Psest_3411 - Transposase and inactivated derivatives, at 3,582,208 to 3,583,053
_3411
Group
Condition
Psest
_3407
Psest
_3408
Psest
_3409
Psest
_3410
Psest
_3411
stress
Chlorate 75 mM
-0.5
-0.9
-1.1
-0.4
N.D.
stress
Def Carbenicillin 0.02 mg/ml
-0.2
-1.0
-0.9
-0.5
N.D.
stress
Cephalothin 0.04 mg/ml
-0.2
-0.5
-1.2
-0.5
N.D.
RCH2 grown on a colony of N2F3
-0.1
-0.4
-1.4
-0.4
N.D.
temperature
LB 30C timecourse1 timepoint 3
-0.5
-0.8
-0.3
-0.5
N.D.
stress
Def Carbenicillin 0.008 mg/ml
-0.5
-0.4
-0.6
-0.5
N.D.
nitrogen source
L-Glutamic (N)
+0.1
-0.1
-2.0
+0.0
N.D.
temperature
LB 30C timecourse2 timepoint 1
-0.4
-0.4
-0.5
-0.4
N.D.
stress
Gentamicin 0.0016 mg/ml
-0.4
-0.2
-0.6
-0.4
N.D.
carbon source
L-Proline (C)
-0.2
-0.4
-0.7
-0.2
N.D.
stress
nitrate 250 mM
+0.0
-0.3
-0.8
-0.3
N.D.
stress
Nalidixic 0.001 mg/ml
+0.2
-0.3
-0.8
-0.4
N.D.
nitrogen source
L-Citrulline (N)
-0.0
-0.5
-0.5
+0.3
N.D.
carbon source
D-Gluconic Acid (C)
+0.3
+0.3
-1.2
-0.1
N.D.
stress
Nalidixic 0.00390625 mg/ml
+0.2
-0.3
-0.9
+0.4
N.D.
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.1
+0.5
-0.7
-0.3
N.D.
stress
Cisplatin 0.0016 mg/ml
+0.1
-0.8
+0.6
+0.0
N.D.
carbon source
L-tyrosine (C)
-0.1
+0.5
-0.8
+0.3
N.D.
RCH2 grown on a colony of ecoli
+0.1
+0.9
-0.5
-0.1
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
+0.7
-0.7
+0.1
N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.1
-0.3
+0.9
-0.3
N.D.
stress
Lactate-nitrate; anaerobic; cobalt stress sample1
-0.2
+0.6
+0.5
-0.1
N.D.
carbon source
propionate (C)
+0.2
+0.7
-0.3
+0.3
N.D.
carbon source
L-tyrosine (C)
-0.0
-0.3
+1.4
-0.1
N.D.
stress
A22 0.002 mg/ml
-0.1
+0.8
+0.2
+0.4
N.D.
vitamin
With vitamins t2
+0.1
+0.8
+0.4
+0.1
N.D.
stress
5-Hydroxymethylfurfural 5 mM
+0.3
+0.4
+0.4
+0.3
N.D.
lb
LB
+0.4
+0.5
+0.2
+0.3
N.D.
lb
LB
+0.1
+0.5
+0.8
+0.1
N.D.
vitamin
With vitamins t1
+0.1
+1.0
+0.5
-0.0
N.D.
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