Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3407 and Psest_3408 are separated by 31 nucleotidesPsest_3408 and Psest_3409 are separated by 104 nucleotidesPsest_3409 and Psest_3410 overlap by 4 nucleotidesPsest_3410 and Psest_3411 are separated by 118 nucleotides Psest_3407: Psest_3407 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 3,576,550 to 3,579,753 _3407 Psest_3408: Psest_3408 - Predicted transcriptional regulators, at 3,579,785 to 3,580,006 _3408 Psest_3409: Psest_3409 - hypothetical protein, at 3,580,111 to 3,580,698 _3409 Psest_3410: Psest_3410 - DNA or RNA helicases of superfamily II, at 3,580,695 to 3,582,089 _3410 Psest_3411: Psest_3411 - Transposase and inactivated derivatives, at 3,582,208 to 3,583,053 _3411
Group Condition Psest_3407 Psest_3408 Psest_3409 Psest_3410 Psest_3411
stress Chlorate 75 mM -0.5 -0.9 -1.1 -0.4 N.D.
stress Def Carbenicillin 0.02 mg/ml -0.2 -1.0 -0.9 -0.5 N.D.
stress Cephalothin 0.04 mg/ml -0.2 -0.5 -1.2 -0.5 N.D.
RCH2 grown on a colony of N2F3 -0.1 -0.4 -1.4 -0.4 N.D.
temperature LB 30C timecourse1 timepoint 3 -0.5 -0.8 -0.3 -0.5 N.D.
stress Def Carbenicillin 0.008 mg/ml -0.5 -0.4 -0.6 -0.5 N.D.
nitrogen source L-Glutamic (N) +0.1 -0.1 -2.0 +0.0 N.D.
temperature LB 30C timecourse2 timepoint 1 -0.4 -0.4 -0.5 -0.4 N.D.
stress Gentamicin 0.0016 mg/ml -0.4 -0.2 -0.6 -0.4 N.D.
carbon source L-Proline (C) -0.2 -0.4 -0.7 -0.2 N.D.
stress nitrate 250 mM +0.0 -0.3 -0.8 -0.3 N.D.
stress Nalidixic 0.001 mg/ml +0.2 -0.3 -0.8 -0.4 N.D.
nitrogen source L-Citrulline (N) -0.0 -0.5 -0.5 +0.3 N.D.
carbon source D-Gluconic Acid (C) +0.3 +0.3 -1.2 -0.1 N.D.
stress Nalidixic 0.00390625 mg/ml +0.2 -0.3 -0.9 +0.4 N.D.
anaerobic Nitrite/ lactate media with Nitrite 20mM -0.1 +0.5 -0.7 -0.3 N.D.
stress Cisplatin 0.0016 mg/ml +0.1 -0.8 +0.6 +0.0 N.D.
carbon source L-tyrosine (C) -0.1 +0.5 -0.8 +0.3 N.D.
RCH2 grown on a colony of ecoli +0.1 +0.9 -0.5 -0.1 N.D.
stress Def 2-Furfuraldehyde 0.032 vol% +0.2 +0.7 -0.7 +0.1 N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.1 -0.3 +0.9 -0.3 N.D.
stress Lactate-nitrate; anaerobic; cobalt stress sample1 -0.2 +0.6 +0.5 -0.1 N.D.
carbon source propionate (C) +0.2 +0.7 -0.3 +0.3 N.D.
carbon source L-tyrosine (C) -0.0 -0.3 +1.4 -0.1 N.D.
stress A22 0.002 mg/ml -0.1 +0.8 +0.2 +0.4 N.D.
vitamin With vitamins t2 +0.1 +0.8 +0.4 +0.1 N.D.
stress 5-Hydroxymethylfurfural 5 mM +0.3 +0.4 +0.4 +0.3 N.D.
lb LB +0.4 +0.5 +0.2 +0.3 N.D.
lb LB +0.1 +0.5 +0.8 +0.1 N.D.
vitamin With vitamins t1 +0.1 +1.0 +0.5 -0.0 N.D.
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