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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3403 and Psest_3404 are separated by 144 nucleotides
Psest_3404 and Psest_3405 are separated by 664 nucleotides
Psest_3405 and Psest_3406 are separated by 124 nucleotides
Psest_3406 and Psest_3407 overlap by 1 nucleotides
Psest_3403: Psest_3403 - Putative protein-S-isoprenylcysteine methyltransferase, at 3,570,597 to 3,571,058
_3403
Psest_3404: Psest_3404 - Glycine/serine hydroxymethyltransferase, at 3,571,203 to 3,572,456
_3404
Psest_3405: Psest_3405 - Type I restriction-modification system methyltransferase subunit, at 3,573,121 to 3,575,097
_3405
Psest_3406: Psest_3406 - Restriction endonuclease S subunits, at 3,575,222 to 3,576,550
_3406
Psest_3407: Psest_3407 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 3,576,550 to 3,579,753
_3407
Group
Condition
Psest
_3403
Psest
_3404
Psest
_3405
Psest
_3406
Psest
_3407
temperature
LB 30C timecourse1 timepoint 3
-0.6
N.D.
-0.6
-0.6
-0.5
carbon source
L-Proline (C)
-0.2
N.D.
-0.7
-1.0
-0.2
stress
Def Carbenicillin 0.008 mg/ml
-0.1
N.D.
-0.4
-0.9
-0.5
carbon source
L-Proline (C)
-0.0
N.D.
-0.4
-1.0
+0.1
stress
Def Carbenicillin 0.02 mg/ml
-0.5
N.D.
-0.4
-0.3
-0.2
stress
Gentamicin 0.0016 mg/ml
-0.1
N.D.
-0.2
-0.6
-0.4
temperature
LB 30C timecourse2 timepoint 1
-0.3
N.D.
-0.3
-0.3
-0.4
RCH2 grown on a colony of N2F3
-0.7
N.D.
-0.4
-0.1
-0.2
stress
Cephalothin 0.04 mg/ml
-0.1
N.D.
-0.1
-0.8
-0.2
temperature
LB 30C timecourse1 timepoint 2
-0.3
N.D.
-0.3
-0.3
-0.3
carbon source
L-Proline (C)
-0.0
N.D.
-0.4
-0.8
+0.1
nitrogen source
Parabanic Acid (N)
-0.1
N.D.
-0.3
-0.4
-0.3
stress
A22 0.002 mg/ml
-0.3
N.D.
-0.2
-0.3
-0.2
temperature
LB 30C timecourse1 timepoint 1
-0.3
N.D.
-0.2
-0.2
-0.2
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.5
N.D.
-0.1
-0.2
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.7
N.D.
-0.2
-0.2
+0.2
carbon source
L-tyrosine (C)
-0.0
N.D.
-0.0
-0.8
-0.1
stress
L-Lysine 200 mM
-0.3
N.D.
-0.0
-0.4
+0.2
carbon source
L-tyrosine (C)
+0.4
N.D.
-0.3
-0.7
-0.0
stress
Doxycycline hyclate 0.0002 mg/ml
-0.6
N.D.
+0.1
+0.2
-0.1
stress
Choline Lysine 20 mM
-0.6
N.D.
+0.1
+0.3
-0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.6
N.D.
-0.1
-0.3
+0.1
stress
Nalidixic 0.001 mg/ml
-0.6
N.D.
+0.3
+0.5
+0.2
RCH2 grown on a colony of ecoli
+0.3
N.D.
-0.2
+0.3
+0.1
stress
Furfuryl Alcohol 0.05 vol%
+0.3
N.D.
+0.2
+0.3
+0.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.4
N.D.
+0.5
-0.1
+0.3
lb
LB
+0.3
N.D.
+0.3
+0.3
+0.2
stress
Phosphomycin 0.012 mg/ml
+0.4
N.D.
+0.2
+0.4
+0.1
stress
Def Chlorate 20 mM
+0.2
N.D.
+0.4
+0.3
+0.4
lb
LB
+0.3
N.D.
+0.4
+0.5
+0.4
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