Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3403 and Psest_3404 are separated by 144 nucleotidesPsest_3404 and Psest_3405 are separated by 664 nucleotidesPsest_3405 and Psest_3406 are separated by 124 nucleotidesPsest_3406 and Psest_3407 overlap by 1 nucleotides Psest_3403: Psest_3403 - Putative protein-S-isoprenylcysteine methyltransferase, at 3,570,597 to 3,571,058 _3403 Psest_3404: Psest_3404 - Glycine/serine hydroxymethyltransferase, at 3,571,203 to 3,572,456 _3404 Psest_3405: Psest_3405 - Type I restriction-modification system methyltransferase subunit, at 3,573,121 to 3,575,097 _3405 Psest_3406: Psest_3406 - Restriction endonuclease S subunits, at 3,575,222 to 3,576,550 _3406 Psest_3407: Psest_3407 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 3,576,550 to 3,579,753 _3407
Group Condition Psest_3403 Psest_3404 Psest_3405 Psest_3406 Psest_3407
temperature LB 30C timecourse1 timepoint 3 -0.6 N.D. -0.6 -0.6 -0.5
carbon source L-Proline (C) -0.2 N.D. -0.7 -1.0 -0.2
stress Def Carbenicillin 0.008 mg/ml -0.1 N.D. -0.4 -0.9 -0.5
carbon source L-Proline (C) -0.0 N.D. -0.4 -1.0 +0.1
stress Def Carbenicillin 0.02 mg/ml -0.5 N.D. -0.4 -0.3 -0.2
stress Gentamicin 0.0016 mg/ml -0.1 N.D. -0.2 -0.6 -0.4
temperature LB 30C timecourse2 timepoint 1 -0.3 N.D. -0.3 -0.3 -0.4
RCH2 grown on a colony of N2F3 -0.7 N.D. -0.4 -0.1 -0.2
stress Cephalothin 0.04 mg/ml -0.1 N.D. -0.1 -0.8 -0.2
temperature LB 30C timecourse1 timepoint 2 -0.3 N.D. -0.3 -0.3 -0.3
carbon source L-Proline (C) -0.0 N.D. -0.4 -0.8 +0.1
nitrogen source Parabanic Acid (N) -0.1 N.D. -0.3 -0.4 -0.3
stress A22 0.002 mg/ml -0.3 N.D. -0.2 -0.3 -0.2
temperature LB 30C timecourse1 timepoint 1 -0.3 N.D. -0.2 -0.2 -0.2
stress Lactate-nitrate; anaerobic; copper stress sample1 -0.5 N.D. -0.1 -0.2 -0.2
stress Polymyxin B sulfate 0.0001 mg/ml -0.7 N.D. -0.2 -0.2 +0.2
carbon source L-tyrosine (C) -0.0 N.D. -0.0 -0.8 -0.1
stress L-Lysine 200 mM -0.3 N.D. -0.0 -0.4 +0.2
carbon source L-tyrosine (C) +0.4 N.D. -0.3 -0.7 -0.0
stress Doxycycline hyclate 0.0002 mg/ml -0.6 N.D. +0.1 +0.2 -0.1
stress Choline Lysine 20 mM -0.6 N.D. +0.1 +0.3 -0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.6 N.D. -0.1 -0.3 +0.1
stress Nalidixic 0.001 mg/ml -0.6 N.D. +0.3 +0.5 +0.2
RCH2 grown on a colony of ecoli +0.3 N.D. -0.2 +0.3 +0.1
stress Furfuryl Alcohol 0.05 vol% +0.3 N.D. +0.2 +0.3 +0.2
stress Def Benzalkonium Chloride 0.002 mg/ml +0.4 N.D. +0.5 -0.1 +0.3
lb LB +0.3 N.D. +0.3 +0.3 +0.2
stress Phosphomycin 0.012 mg/ml +0.4 N.D. +0.2 +0.4 +0.1
stress Def Chlorate 20 mM +0.2 N.D. +0.4 +0.3 +0.4
lb LB +0.3 N.D. +0.4 +0.5 +0.4
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