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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3395 and Psest_3396 are separated by 172 nucleotides
Psest_3396 and Psest_3397 are separated by 279 nucleotides
Psest_3397 and Psest_3398 are separated by 63 nucleotides
Psest_3398 and Psest_3399 are separated by 223 nucleotides
Psest_3395: Psest_3395 - hypothetical protein, at 3,562,972 to 3,563,307
_3395
Psest_3396: Psest_3396 - Predicted ATP-dependent protease, at 3,563,480 to 3,565,921
_3396
Psest_3397: Psest_3397 - Cytochrome c peroxidase, at 3,566,201 to 3,567,229
_3397
Psest_3398: Psest_3398 - large conductance mechanosensitive channel protein, at 3,567,293 to 3,567,703
_3398
Psest_3399: Psest_3399 - Uncharacterized protein conserved in bacteria, at 3,567,927 to 3,568,196
_3399
Group
Condition
Psest
_3395
Psest
_3396
Psest
_3397
Psest
_3398
Psest
_3399
RCH2 grown on a colony of Serratia
-4.0
-0.2
+0.2
-0.1
-3.5
RCH2 grown on a colony of N2A2
-0.3
-0.1
+0.1
-1.2
-3.4
stress
Nalidixic 0.00390625 mg/ml
-2.5
+0.7
-0.3
+0.7
-2.6
RCH2 grown on a colony of N2C3
-0.0
+0.1
-0.4
-1.4
-2.2
stress
acetate 80 mM
-2.8
-0.2
+0.0
-0.7
+0.1
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.9
-0.1
+0.2
-0.1
-1.6
temperature
LB 30C timecourse2 timepoint 2
-0.5
-0.1
-0.1
+0.2
-3.0
stress
methylglyoxal 0.0016 vol%
-4.2
+0.9
+0.1
-0.3
+0.1
nitrogen source
Putrescine (N)
-1.7
+0.1
-0.2
+0.2
-1.8
stress
Cobalt chloride 0.07 mM
-3.6
-0.4
-0.1
+0.2
+0.6
stress
Nickel (II) chloride 0.8 mM
-0.4
+0.2
+0.1
+0.3
-3.4
nutrient
Min media with glucose
-1.2
+0.1
-0.1
+0.3
-2.2
stress
nitrate 200 mM
-0.7
-0.4
+0.3
+0.6
-2.7
stress
Furfuryl Alcohol 0.05 vol%
-1.6
+0.6
-0.3
+0.7
-2.1
stress
Choline chloride 90 mM
+1.9
-0.5
+0.2
-0.7
-3.5
stress
Nalidixic 0.00390625 mg/ml
-1.4
+0.4
+0.3
-0.2
-1.6
stress
Paraquat dichloride 0.015 mg/ml
-3.3
+0.1
-0.1
+1.0
-0.1
stress
Carbenicillin 0.008 mg/ml
-3.9
-0.2
-0.2
+0.7
+1.2
carbon source
acetate (C)
+0.6
+0.1
+0.3
-0.0
-3.0
stress
Spectinomycin 0.00625 mg/ml
-2.7
-0.0
+0.2
-0.3
+1.0
carbon source
Tween 20 (C)
-2.7
+0.1
+0.0
-0.1
+1.0
stress
Vancomycin 0.016 mg/ml
+1.6
-0.4
-0.1
-0.7
-2.2
stress
Benzethonium chloride 0.01 mM
-1.5
+0.2
-0.1
-1.1
+0.9
stress
benzoic 0.4 mg/ml
-2.0
-0.4
+0.0
+0.2
+2.0
stress
Fusidic 0.016 mg/ml
+0.9
-1.0
+0.0
-0.8
+1.7
stress
Fusidic 0.016 mg/ml
+0.9
-1.5
+0.6
+0.7
+1.6
RCH2 grown on a colony of ecoli
+1.2
-0.0
-0.2
-0.7
+2.2
stress
Cephalothin 0.04 mg/ml
+0.4
+0.1
+0.9
-0.5
+2.4
stress
nitrate 200 mM
+2.1
+0.2
+0.5
-0.3
+1.6
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.9
-0.4
+0.6
+0.6
+1.6
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