Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0332 and Psest_0333 are separated by 178 nucleotidesPsest_0333 and Psest_0334 are separated by 60 nucleotidesPsest_0334 and Psest_0335 are separated by 319 nucleotidesPsest_0335 and Psest_0336 are separated by 177 nucleotides Psest_0332: Psest_0332 - Membrane-bound lysozyme-inhibitor of c-type lysozyme., at 355,603 to 355,938 _0332 Psest_0333: Psest_0333 - fructose-bisphosphate aldolase, class II, Calvin cycle subtype, at 356,117 to 357,181 _0333 Psest_0334: Psest_0334 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 357,242 to 357,622 _0334 Psest_0335: Psest_0335 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 357,942 to 358,556 _0335 Psest_0336: Psest_0336 - Protein of unknown function (DUF3509)., at 358,734 to 359,012 _0336
Group Condition Psest_0332 Psest_0333 Psest_0334 Psest_0335 Psest_0336
RCH2 grown on a colony of ecoli -0.1 N.D. -2.6 -0.0 N.D.
carbon source pyruvate (C) -0.0 N.D. -2.5 -0.1 N.D.
RCH2 grown on a colony of ecoli -0.0 N.D. -2.6 +0.1 N.D.
RCH2 grown on a colony of Serratia +0.2 N.D. -2.2 -0.3 N.D.
stress Def Doxycycline hyclate 0.0002 mg/ml +0.1 N.D. -2.3 -0.1 N.D.
stress Nalidixic 0.00390625 mg/ml +0.2 N.D. -2.3 +0.0 N.D.
stress Def Tetracycline 0.0004 mg/ml +0.1 N.D. -2.2 -0.1 N.D.
radiation Ionizing radiation, 0 Gy -0.1 N.D. -2.0 -0.0 N.D.
stress Lactate-nitrate; anaerobic; copper stress sample3 -0.1 N.D. -1.8 -0.1 N.D.
stress Def Fusidic 0.032 mg/ml -0.1 N.D. -1.8 +0.1 N.D.
nitrogen source Parabanic Acid (N) -0.0 N.D. -1.8 +0.0 N.D.
carbon source succinate (C) -0.3 N.D. -1.5 +0.0 N.D.
nitrogen source nitrate (N) +0.1 N.D. -1.7 -0.1 N.D.
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample3 +0.2 N.D. -1.9 -0.0 N.D.
carbon source pyruvate (C) +0.1 N.D. -1.6 +0.2 N.D.
metal limitation Lactate; aerobic; with copper, sample2 +0.2 N.D. -1.7 +0.1 N.D.
stress Lactate-nitrate; anaerobic; nickel stress sample1 +0.3 N.D. -1.3 -0.3 N.D.
stress 5-Hydroxymethylfurfural 5 mM +0.4 N.D. -1.7 +0.1 N.D.
nitrogen source nitrite (N) +0.7 N.D. -1.4 -0.3 N.D.
stress Nickel (II) chloride 0.9 mM +0.4 N.D. -1.5 +0.3 N.D.
stress Choline Lysine 20 mM +0.1 N.D. -1.1 +0.7 N.D.
RCH2 grown on a colony of Serratia +1.1 N.D. -0.4 -0.8 N.D.
stress Nickel (II) chloride 1 mM +0.8 N.D. -0.9 +0.1 N.D.
carbon source D-Fructose (C) +1.3 N.D. -0.8 -0.2 N.D.
carbon source D-Fructose (C) +1.3 N.D. -0.5 -0.0 N.D.
stress D-Cycloserine 0.032 mg/ml -0.4 N.D. +1.4 -0.1 N.D.
stress Choline chloride 90 mM -0.2 N.D. +0.4 +1.5 N.D.
stress 2-Furfuraldehyde 0.05 vol% +0.6 N.D. +1.6 +0.1 N.D.
stress Cephalothin 0.04 mg/ml +0.4 N.D. +1.1 +0.8 N.D.
nitrogen source nitrite (N) -0.2 N.D. +2.0 +0.7 N.D.
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