Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3372 and Psest_3373 overlap by 4 nucleotidesPsest_3373 and Psest_3374 are separated by 4 nucleotidesPsest_3374 and Psest_3375 overlap by 4 nucleotidesPsest_3375 and Psest_3376 are separated by 53 nucleotides Psest_3372: Psest_3372 - Tfp pilus assembly protein PilW, at 3,540,178 to 3,541,251 _3372 Psest_3373: Psest_3373 - Tfp pilus assembly protein PilX, at 3,541,248 to 3,541,781 _3373 Psest_3374: Psest_3374 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,541,786 to 3,545,556 _3374 Psest_3375: Psest_3375 - prepilin-type N-terminal cleavage/methylation domain, at 3,545,553 to 3,545,999 _3375 Psest_3376: Psest_3376 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 3,546,053 to 3,546,997 _3376
Group Condition Psest_3372 Psest_3373 Psest_3374 Psest_3375 Psest_3376
stress Def Tetracycline 0.0004 mg/ml -2.6 -2.5 -2.4 -0.3 N.D.
carbon source D-Fructose (C) -1.6 -1.8 -1.6 -0.8 N.D.
carbon source D-Fructose (C) -1.7 -1.7 -1.5 -1.0 N.D.
stress Def Vancomycin 0.016 mg/ml -1.7 -2.0 -1.6 +0.1 N.D.
stress Def Nalidixic 0.001 mg/ml -1.2 -1.6 -1.6 -0.2 N.D.
stress Def Benzethonium chloride 0.008 mM -1.7 -1.5 -1.4 +0.1 N.D.
stress Def Cephalothin 0.08 mg/ml -1.7 -1.6 -1.4 +0.2 N.D.
stress Def Benzalkonium Chloride 0.002 mg/ml -1.3 -0.7 -2.0 -0.2 N.D.
stress Def Doxycycline hyclate 0.0002 mg/ml -1.3 -1.6 -1.2 -0.1 N.D.
carbon source butyrate (C) +0.6 +0.5 +0.6 -3.8 N.D.
carbon source butyrate (C) +0.9 +0.5 +0.5 -3.2 N.D.
stress Def Polymyxin B sulfate 0.0001 mg/ml +1.2 +1.2 +1.0 -0.8 N.D.
stress Def Cisplatin 0.0002 mg/ml +1.4 +1.2 +1.0 -0.2 N.D.
carbon source L-Glutamine (C) +1.6 +1.3 +1.0 -0.3 N.D.
carbon source L-Alanine (C) +1.3 +1.5 +1.1 -0.2 N.D.
carbon source L-Glutamine (C) +1.5 +1.4 +1.1 -0.3 N.D.
carbon source L-Glutamine (C) +1.5 +1.3 +1.0 -0.1 N.D.
nitrogen source D-Alanine (N) +1.3 +1.4 +1.4 -0.3 N.D.
nitrogen source Parabanic Acid (N) +1.3 +1.5 +1.3 -0.2 N.D.
carbon source Ethanol (C) +2.1 +1.8 +1.3 -1.0 N.D.
nitrogen source nitrate (N) +1.4 +1.5 +1.3 +0.1 N.D.
carbon source Ethanol (C) +2.2 +1.5 +1.7 -0.7 N.D.
nitrogen source L-Alanine (N) +1.7 +1.9 +1.8 -0.3 N.D.
stress Bacitracin 0.25 mg/ml +1.8 +1.5 +1.4 +0.8 N.D.
stress Bacitracin 0.25 mg/ml +1.7 +1.8 +1.5 +0.5 N.D.
nitrogen source L-Valine (N) +2.5 +2.0 +1.6 -0.5 N.D.
nitrogen source L-Valine (N) +2.6 +2.2 +1.8 -0.1 N.D.
carbon source butyrate (C) +2.5 +2.7 +2.6 -1.3 N.D.
nitrogen source nitrite (N) +2.5 +2.5 +2.4 -0.2 N.D.
nitrogen source nitrite (N) +2.9 +3.0 +3.0 -0.1 N.D.
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