Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3370 and Psest_3371 overlap by 4 nucleotidesPsest_3371 and Psest_3372 overlap by 4 nucleotidesPsest_3372 and Psest_3373 overlap by 4 nucleotidesPsest_3373 and Psest_3374 are separated by 4 nucleotides Psest_3370: Psest_3370 - prepilin-type N-terminal cleavage/methylation domain, at 3,539,223 to 3,539,714 _3370 Psest_3371: Psest_3371 - type IV pilus modification protein PilV, at 3,539,711 to 3,540,181 _3371 Psest_3372: Psest_3372 - Tfp pilus assembly protein PilW, at 3,540,178 to 3,541,251 _3372 Psest_3373: Psest_3373 - Tfp pilus assembly protein PilX, at 3,541,248 to 3,541,781 _3373 Psest_3374: Psest_3374 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,541,786 to 3,545,556 _3374
Group Condition Psest_3370 Psest_3371 Psest_3372 Psest_3373 Psest_3374
stress Def Tetracycline 0.0004 mg/ml -1.6 -2.0 -2.6 -2.5 -2.4
stress Def Vancomycin 0.016 mg/ml -1.4 -1.6 -1.7 -2.0 -1.6
carbon source D-Fructose (C) -1.2 -1.8 -1.6 -1.8 -1.6
carbon source D-Fructose (C) -1.2 -1.7 -1.7 -1.7 -1.5
stress Def Benzethonium chloride 0.008 mM -1.5 -1.5 -1.7 -1.5 -1.4
stress Def Cephalothin 0.08 mg/ml -1.2 -1.3 -1.7 -1.6 -1.4
stress Def Nalidixic 0.001 mg/ml -1.1 -1.1 -1.2 -1.6 -1.6
stress Def Benzalkonium Chloride 0.002 mg/ml -1.2 -1.2 -1.3 -0.7 -2.0
stress Def Doxycycline hyclate 0.0002 mg/ml -1.0 -1.3 -1.3 -1.6 -1.2
carbon source L-Alanine (C) +1.0 +1.1 +1.3 +1.1 +1.2
RCH2 grown on a colony of N2A2 +0.9 +1.5 +1.2 +1.3 +0.9
stress Def Cisplatin 0.0002 mg/ml +1.0 +1.3 +1.4 +1.2 +1.0
stress A22 0.005 mg/ml +1.2 +1.4 +1.3 +1.2 +1.1
carbon source L-Alanine (C) +1.2 +1.2 +1.3 +1.5 +1.1
nitrogen source D-Alanine (N) +1.1 +1.3 +1.3 +1.4 +1.4
nitrogen source Parabanic Acid (N) +1.1 +1.3 +1.3 +1.5 +1.3
nitrogen source nitrate (N) +1.2 +1.5 +1.4 +1.5 +1.3
carbon source L-Glutamine (C) +1.3 +1.7 +1.5 +1.3 +1.0
carbon source L-Glutamine (C) +1.2 +1.8 +1.5 +1.4 +1.1
carbon source L-Glutamine (C) +1.4 +1.8 +1.6 +1.3 +1.0
stress Bacitracin 0.25 mg/ml +1.6 +1.9 +1.8 +1.5 +1.4
nitrogen source L-Alanine (N) +1.5 +1.7 +1.7 +1.9 +1.8
carbon source Ethanol (C) +1.7 +2.1 +2.1 +1.8 +1.3
stress Bacitracin 0.25 mg/ml +1.7 +2.3 +1.7 +1.8 +1.5
carbon source Ethanol (C) +1.8 +2.0 +2.2 +1.5 +1.7
nitrogen source L-Valine (N) +1.9 +2.6 +2.5 +2.0 +1.6
nitrogen source L-Valine (N) +2.2 +2.8 +2.6 +2.2 +1.8
nitrogen source nitrite (N) +2.2 +2.5 +2.5 +2.5 +2.4
carbon source butyrate (C) +2.7 +2.5 +2.5 +2.7 +2.6
nitrogen source nitrite (N) +2.8 +3.0 +2.9 +3.0 +3.0
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