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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3345 and Psest_3346 are separated by 142 nucleotides
Psest_3346 and Psest_3347 are separated by 287 nucleotides
Psest_3347 and Psest_3348 are separated by 139 nucleotides
Psest_3348 and Psest_3349 overlap by 1 nucleotides
Psest_3345: Psest_3345 - Sulfite reductase, alpha subunit (flavoprotein), at 3,510,154 to 3,511,680
_3345
Psest_3346: Psest_3346 - TonB-dependent siderophore receptor, at 3,511,823 to 3,513,895
_3346
Psest_3347: Psest_3347 - TonB-dependent siderophore receptor, at 3,514,183 to 3,516,441
_3347
Psest_3348: Psest_3348 - Uncharacterized iron-regulated protein, at 3,516,581 to 3,517,261
_3348
Psest_3349: Psest_3349 - Sel1 repeat., at 3,517,261 to 3,518,007
_3349
Group
Condition
Psest
_3345
Psest
_3346
Psest
_3347
Psest
_3348
Psest
_3349
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.1
-0.2
+0.1
-0.8
-0.6
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.2
-0.8
-0.1
-0.9
+0.4
stress
Paraquat dichloride 0.015 mg/ml
-0.3
-0.6
-0.1
-0.3
+0.3
stress
Cobalt chloride 0.07 mM
-0.8
-0.1
+0.2
-0.4
+0.3
stress
Cobalt chloride 0.08 mM
-1.3
-0.1
+0.3
+0.3
-0.1
nitrogen source
nitrite (N)
+0.1
+0.0
-0.1
-1.1
+0.3
RCH2 grown on a colony of Serratia
-0.1
+0.4
+0.0
-0.8
-0.1
stress
Def Benzethonium chloride 0.008 mM
+0.2
-0.9
+0.2
-0.6
+0.5
stress
Cobalt chloride 0.08 mM
-1.1
-0.2
+0.3
+0.2
+0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.0
-0.7
+0.2
-0.2
+0.5
nitrogen source
nitrite (N)
+0.5
-0.5
+0.1
-0.7
+0.5
stress
Furfuryl Alcohol 0.05 vol%
-0.3
+0.4
+0.1
+0.2
-0.4
stress
Lactate-nitrate; anaerobic; nickel stress sample1
+0.3
-0.1
+0.2
-0.6
+0.5
stress
Cobalt chloride 0.07 mM
-0.9
-0.0
+0.3
+0.7
+0.2
stress
Paraquat dichloride 0.015 mg/ml
+0.1
-0.8
+0.0
+0.8
+0.1
stress
nitrate 250 mM
-0.6
-0.9
+0.5
+0.7
+0.8
stress
Cephalothin 0.04 mg/ml
+0.3
-0.6
+0.2
-0.3
+0.9
stress
Fusidic 0.016 mg/ml
+0.8
-0.8
+0.3
-0.3
+0.7
carbon source
RCH2 defined media
+0.4
-0.2
+0.2
-0.1
+0.6
carbon source
L-tyrosine (C)
-0.1
-0.3
+0.3
+0.5
+0.5
stress
Chlorate 75 mM
-0.3
-0.1
+0.0
+1.3
+0.2
stress
Def Neomycin 0.0008 mg/ml
+0.3
+0.3
+0.2
+0.5
+0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.5
-0.1
+0.4
-0.2
+0.8
nitrogen source
L-Glutamine (N)
+0.2
+0.3
+0.3
+0.3
+0.4
stress
Gentamicin 0.0016 mg/ml
+0.4
+0.5
+0.4
-0.3
+0.8
stress
Choline Lysine 20 mM
+0.7
+0.1
+0.5
+0.6
-0.0
stress
Choline Lysine 20 mM
+0.5
+0.2
+0.5
+0.2
+0.5
stress
L-Lysine 200 mM
+0.5
+0.0
+0.5
+0.6
+0.6
stress
Def Carbenicillin 0.02 mg/ml
+0.8
+0.4
+0.3
+0.2
+0.7
stress
L-Lysine 200 mM
+0.6
+0.2
+0.4
+0.7
+0.7
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