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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3343 and Psest_3344 are separated by 14 nucleotides
Psest_3344 and Psest_3345 are separated by 102 nucleotides
Psest_3345 and Psest_3346 are separated by 142 nucleotides
Psest_3346 and Psest_3347 are separated by 287 nucleotides
Psest_3343: Psest_3343 - Predicted periplasmic protein, at 3,508,652 to 3,509,161
_3343
Psest_3344: Psest_3344 - ABC-type Co2+ transport system, periplasmic component, at 3,509,176 to 3,510,051
_3344
Psest_3345: Psest_3345 - Sulfite reductase, alpha subunit (flavoprotein), at 3,510,154 to 3,511,680
_3345
Psest_3346: Psest_3346 - TonB-dependent siderophore receptor, at 3,511,823 to 3,513,895
_3346
Psest_3347: Psest_3347 - TonB-dependent siderophore receptor, at 3,514,183 to 3,516,441
_3347
Group
Condition
Psest
_3343
Psest
_3344
Psest
_3345
Psest
_3346
Psest
_3347
stress
nitrate 250 mM
-1.5
-1.4
-0.6
-0.9
+0.5
stress
Cobalt chloride 0.07 mM
-1.8
-1.3
-0.8
-0.1
+0.2
stress
nitrate 200 mM
-2.0
-1.0
-0.2
+0.1
-0.0
stress
Cobalt chloride 0.08 mM
-0.3
-1.8
-1.1
-0.2
+0.3
stress
Cobalt chloride 0.08 mM
-0.8
-1.1
-1.3
-0.1
+0.3
stress
Cobalt chloride 0.07 mM
-1.0
-0.8
-0.9
-0.0
+0.3
RCH2 grown on a colony of N2F3
-1.7
-0.6
-0.2
+0.2
-0.0
stress
Cobalt chloride 0.05 mM
-0.5
-0.9
-0.6
-0.1
+0.2
stress
nitrate 200 mM
-0.7
-0.7
-0.3
-0.2
+0.1
stress
Cobalt chloride 0.06 mM
-0.4
-0.7
-0.7
+0.1
+0.1
stress
Carbenicillin 0.0065 mg/ml
-0.9
-0.3
-0.2
+0.1
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
-0.4
-0.6
-0.4
+0.1
RCH2 grown on a colony of N2C3
-1.0
-0.6
-0.1
+0.5
-0.1
stress
Def Cephalothin 0.08 mg/ml
-1.4
+0.1
-0.2
-0.0
+0.2
stress
Cobalt chloride 0.05 mM
-0.2
-0.6
-0.6
+0.0
+0.3
stress
Carbenicillin 0.008 mg/ml
-0.8
+0.2
-0.5
+0.2
+0.1
temperature
LB 30C timecourse2 timepoint 2
-1.2
+0.3
+0.2
+0.1
+0.0
stress
Paraquat dichloride 0.015 mg/ml
+0.7
-0.3
-0.3
-0.6
-0.1
stress
Def Neomycin 0.0008 mg/ml
-0.8
-0.3
+0.3
+0.3
+0.2
RCH2 grown on a colony of Serratia
+0.8
-0.4
-0.1
+0.5
-0.5
nitrogen source
nitrite (N)
+0.6
+0.2
+0.5
-0.5
+0.1
stress
Fusidic 0.016 mg/ml
+0.1
+0.7
+0.8
-0.8
+0.3
carbon source
L-tyrosine (C)
+0.7
+0.7
-0.1
-0.3
+0.3
RCH2 grown on a colony of N2A2
+1.1
+0.4
+0.1
+0.0
-0.0
stress
L-Lysine 200 mM
+0.3
+0.7
+0.5
+0.0
+0.5
stress
Gentamicin 0.0016 mg/ml
+0.7
+0.6
+0.4
+0.5
+0.4
stress
L-Lysine 200 mM
+0.5
+0.9
+0.6
+0.2
+0.4
stress
Def Carbenicillin 0.02 mg/ml
+1.2
-0.0
+0.8
+0.4
+0.3
stress
Choline Lysine 20 mM
+1.2
+0.7
+0.7
+0.1
+0.5
stress
Choline Lysine 20 mM
+1.1
+1.0
+0.5
+0.2
+0.5
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