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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3318 and Psest_3319 are separated by 112 nucleotides
Psest_3319 and Psest_3320 are separated by 75 nucleotides
Psest_3320 and Psest_3321 are separated by 2 nucleotides
Psest_3321 and Psest_3322 are separated by 40 nucleotides
Psest_3318: Psest_3318 - Predicted Zn-dependent proteases and their inactivated homologs, at 3,480,266 to 3,481,612
_3318
Psest_3319: Psest_3319 - Uncharacterized protein conserved in bacteria, at 3,481,725 to 3,482,246
_3319
Psest_3320: Psest_3320 - Predicted Zn-dependent proteases and their inactivated homologs, at 3,482,322 to 3,483,764
_3320
Psest_3321: Psest_3321 - Predicted amidohydrolase, at 3,483,767 to 3,484,612
_3321
Psest_3322: Psest_3322 - TIGR02099 family protein, at 3,484,653 to 3,488,456
_3322
Group
Condition
Psest
_3318
Psest
_3319
Psest
_3320
Psest
_3321
Psest
_3322
stress
Def Benzethonium chloride 0.008 mM
+0.5
-0.3
-0.2
-0.1
-6.1
carbon source
D-Alanine (C)
-0.0
+0.1
-0.1
-0.4
-5.4
stress
Def Vancomycin 0.008 mg/ml
-0.1
+0.1
-0.1
-0.2
-5.5
stress
Bacitracin 0.25 mg/ml
+0.0
-0.7
+0.2
-0.1
-5.1
stress
Bacitracin 0.25 mg/ml
-0.0
-0.2
-0.3
-0.1
-4.8
carbon source
D-Alanine (C)
-0.1
+0.3
+0.1
-0.3
-5.5
temperature
Glucose defined 30C timecourse1 timepoint 3
-0.1
-0.2
+0.2
+0.2
-5.2
vitamin
With vitamins t2
-0.3
-0.5
-0.0
+0.2
-3.9
vitamin
No vitamins t2
-0.2
-0.0
-0.0
-0.2
-4.1
stress
Def Vancomycin 0.016 mg/ml
+0.2
+0.1
+0.1
-0.1
-4.7
stress
Def Cephalothin 0.08 mg/ml
-0.2
+0.2
-0.1
-0.3
-3.9
stress
Anaerobic 500 uM Zinc chloride sample3
-0.1
-0.3
-0.1
-0.1
-3.7
carbon source
L-tyrosine (C)
-0.0
+0.0
+0.3
-0.4
-4.0
stress
Anaerobic 500 uM Zinc chloride sample1
-0.1
-0.1
-0.2
-0.1
-3.5
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.1
+0.1
-0.2
+0.1
-4.1
stress
Anaerobic 500 uM Zinc chloride sample2
-0.1
-0.0
+0.0
-0.2
-3.8
carbon source
L-tyrosine (C)
+0.1
-0.1
+0.1
+0.3
-4.4
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.1
-0.0
-0.2
-0.2
-3.2
nitrogen source
L-Isoleucine (N)
+0.3
-0.5
-0.4
-1.3
-1.6
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
+0.2
-0.3
-0.5
-2.4
carbon source
Ethanol (C)
+0.1
-0.0
+0.2
-0.3
-3.4
stress
Def Cephalothin 0.04 mg/ml
-0.2
+0.3
-0.1
+0.0
-3.3
stress
Def Carbenicillin 0.008 mg/ml
+1.0
+0.5
+0.3
-0.2
-4.9
carbon source
Ethanol (C)
+0.2
-0.1
+0.3
-0.1
-3.4
carbon source
L-Leucine (C)
+0.1
+0.3
+0.0
+0.2
-3.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.4
+0.3
+0.1
-0.4
-2.7
stress
Vancomycin 0.016 mg/ml
-0.3
+0.6
+0.1
-0.0
-2.8
stress
Cephalothin 0.04 mg/ml
+0.8
+0.6
+0.5
-0.1
-3.8
stress
Def Carbenicillin 0.02 mg/ml
+0.2
+0.2
+0.4
+0.2
-2.7
stress
Choline chloride 90 mM
+0.0
-1.3
-0.2
+0.2
+1.9
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