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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3236 and Psest_3237 are separated by 169 nucleotides
Psest_3237 and Psest_3238 are separated by 89 nucleotides
Psest_3238 and Psest_3239 are separated by 353 nucleotides
Psest_3239 and Psest_3240 are separated by 190 nucleotides
Psest_3236: Psest_3236 - hypothetical protein, at 3,407,100 to 3,407,684
_3236
Psest_3237: Psest_3237 - hypothetical protein, at 3,407,854 to 3,408,045
_3237
Psest_3238: Psest_3238 - malate:quinone-oxidoreductase, at 3,408,135 to 3,409,625
_3238
Psest_3239: Psest_3239 - hypothetical protein, at 3,409,979 to 3,410,266
_3239
Psest_3240: Psest_3240 - Sulfate permease and related transporters (MFS superfamily), at 3,410,457 to 3,412,187
_3240
Group
Condition
Psest
_3236
Psest
_3237
Psest
_3238
Psest
_3239
Psest
_3240
RCH2 grown on a colony of 8R2A
-1.5
-1.5
N.D.
-0.8
-1.1
carbon source
propionate (C)
-0.1
-2.5
N.D.
-0.9
-0.3
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-1.4
-1.2
N.D.
-0.5
+0.0
stress
Phosphomycin 0.012 mg/ml
-1.1
-1.4
N.D.
+0.2
-0.5
stress
Choline Lysine 20 mM
-2.7
+0.4
N.D.
-0.3
+0.3
stress
Furfuryl Alcohol 0.05 vol%
+0.3
-2.5
N.D.
+0.4
-0.3
stress
nitrite 2.5 mM
-0.4
-1.3
N.D.
-0.7
+0.4
stress
Nalidixic 0.00390625 mg/ml
+0.6
-2.1
N.D.
+0.2
-0.7
carbon source
L-tyrosine (C)
-2.1
-0.4
N.D.
+0.8
-0.3
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-2.2
+0.4
N.D.
+0.1
-0.1
stress
Choline Lysine 20 mM
-2.5
+0.0
N.D.
+0.4
+0.3
stress
Cobalt chloride 0.08 mM
-1.9
-0.2
N.D.
-0.1
+0.5
nitrogen source
L-Citrulline (N)
-1.0
-1.2
N.D.
+0.5
-0.0
stress
L-Lysine 200 mM
-2.0
+0.5
N.D.
+0.2
-0.2
stress
Bacitracin 0.25 mg/ml
-1.9
+0.6
N.D.
-0.1
+0.0
RCH2 grown on a colony of Serratia
-1.7
+1.3
N.D.
-0.5
-0.6
stress
syringaldehyde 3 mM
-1.9
+0.6
N.D.
-0.4
+0.2
nitrogen source
L-Glutamic (N)
-0.6
+0.5
N.D.
-1.5
+0.3
stress
nitrate 200 mM
-0.4
+1.0
N.D.
-1.2
-0.7
stress
Nickel (II) chloride 0.9 mM
-0.7
-1.3
N.D.
+0.0
+0.8
stress
Def Vancomycin 0.008 mg/ml
-2.0
+0.5
N.D.
+0.3
+0.1
stress
Def Vancomycin 0.016 mg/ml
-1.9
+0.7
N.D.
+0.2
-0.0
stress
sodium fluoride 8.5 mM
-0.7
+1.0
N.D.
-1.0
-0.1
stress
Spectinomycin 0.00625 mg/ml
+0.9
+0.3
N.D.
-1.1
-0.7
stress
Fusidic 0.016 mg/ml
-1.6
+0.8
N.D.
+0.4
+0.0
nutrient
L-tyrosine
+1.0
-0.9
N.D.
-0.6
+0.3
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+1.4
-1.3
N.D.
+0.3
-0.2
stress
Def Carbenicillin 0.008 mg/ml
-1.1
+1.0
N.D.
+0.9
+0.3
RCH2 grown on a colony of N2C3
+1.1
+2.2
N.D.
-0.8
-0.7
nitrogen source
nitrite (N)
+0.2
+1.6
N.D.
+0.7
+0.9
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