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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_3218 and Psest_3219 are separated by 130 nucleotides
Psest_3219 and Psest_3221 are separated by 364 nucleotides
Psest_3221 and Psest_3222 are separated by 106 nucleotides
Psest_3222 and Psest_3223 are separated by 68 nucleotides
Psest_3218: Psest_3218 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,391,556 to 3,392,209
_3218
Psest_3219: Psest_3219 - Zn-dependent hydrolases, including glyoxylases, at 3,392,340 to 3,392,990
_3219
Psest_3221: Psest_3221 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 3,393,355 to 3,395,040
_3221
Psest_3222: Psest_3222 - Putative threonine efflux protein, at 3,395,147 to 3,395,776
_3222
Psest_3223: Psest_3223 - Lactate dehydrogenase and related dehydrogenases, at 3,395,845 to 3,396,804
_3223
Group
Condition
Psest
_3218
Psest
_3219
Psest
_3221
Psest
_3222
Psest
_3223
RCH2 grown on a colony of N2F3
+0.0
-0.5
-0.1
-2.7
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.8
-0.4
-0.2
-1.3
N.D.
stress
Paraquat dichloride 0.015 mg/ml
-0.3
-0.5
+0.1
-1.5
N.D.
stress
sodium fluoride 6.25 mM
-0.1
-0.2
-0.3
-1.4
N.D.
stress
nitrate 250 mM
-0.8
-0.0
+0.2
-1.4
N.D.
stress
Gentamicin 0.0016 mg/ml
+0.2
-0.2
+0.1
-1.9
N.D.
stress
Thallium(I) acetate 0.1 mg/ml
-0.2
+0.4
-0.3
-1.8
N.D.
RCH2 grown on a colony of N2F3
-0.3
-0.4
+0.0
-1.0
N.D.
carbon source
Glycolic Acid (C)
+0.0
+0.3
-0.3
-1.7
N.D.
stress
L-Lysine 200 mM
-0.8
+0.5
+0.0
-1.4
N.D.
RCH2 grown on a colony of Serratia
+0.2
-0.2
-0.1
-1.3
N.D.
stress
Def Nalidixic 0.001 mg/ml
-0.4
+0.3
+0.0
-1.3
N.D.
stress
Choline Lysine 20 mM
+0.1
-0.2
+0.1
-1.4
N.D.
stress
Lactate-nitrate; anaerobic; copper stress sample2
-0.2
+0.2
+0.1
-1.4
N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.3
-0.4
+0.1
-1.1
N.D.
RCH2 grown on a colony of N2A2
-0.1
+0.3
+0.1
-1.4
N.D.
nutrient
L-tyrosine
-0.2
+0.5
+0.0
-1.3
N.D.
stress
Bacitracin 0.25 mg/ml
-1.3
-0.1
-0.1
+0.7
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.5
+0.6
+0.2
-0.9
N.D.
stress
Def Neomycin 0.0008 mg/ml
-1.2
+0.2
+0.2
+0.7
N.D.
stress
L-Lysine 200 mM
-0.5
-0.3
-0.1
+0.8
N.D.
stress
Bacitracin 0.25 mg/ml
-0.9
+0.4
+0.0
+0.4
N.D.
RCH2 grown on a colony of ecoli
-0.1
+0.8
+0.2
-1.0
N.D.
carbon source
L-tyrosine (C)
-0.5
+0.1
+0.0
+1.1
N.D.
stress
syringaldehyde 3 mM
-0.6
+0.1
-0.1
+1.4
N.D.
stress
Cisplatin 0.003 mg/ml
-0.4
+0.3
-0.1
+1.2
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.3
+0.7
+0.0
+0.9
N.D.
stress
Paraquat dichloride 0.015 mg/ml
-0.2
+0.5
-0.1
+1.3
N.D.
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.1
+0.1
+0.1
+1.8
N.D.
stress
acetate 80 mM
-0.0
+0.7
+0.1
+1.1
N.D.
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