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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3211 and Psest_3212 are separated by 114 nucleotides
Psest_3212 and Psest_3213 are separated by 237 nucleotides
Psest_3213 and Psest_3214 are separated by 163 nucleotides
Psest_3214 and Psest_3215 are separated by 133 nucleotides
Psest_3211: Psest_3211 - Glutathione peroxidase, at 3,379,612 to 3,380,094
_3211
Psest_3212: Psest_3212 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 3,380,209 to 3,380,694
_3212
Psest_3213: Psest_3213 - acetate kinase, at 3,380,932 to 3,382,119
_3213
Psest_3214: Psest_3214 - phosphate acetyltransferase, at 3,382,283 to 3,384,379
_3214
Psest_3215: Psest_3215 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,384,513 to 3,385,421
_3215
Group
Condition
Psest
_3211
Psest
_3212
Psest
_3213
Psest
_3214
Psest
_3215
carbon source
acetate (C)
N.D.
+0.3
-4.5
-4.5
-0.9
carbon source
acetate (C)
N.D.
+0.1
-3.5
-4.8
-0.4
carbon source
Ethanol (C)
N.D.
+0.3
-3.2
-3.9
-0.4
RCH2 grown on a colony of Serratia
N.D.
-1.3
-0.2
-0.9
-2.1
nitrogen source
nitrite (N)
N.D.
+0.7
-2.6
-1.3
-0.3
carbon source
Ethanol (C)
N.D.
-0.1
-1.5
-1.8
-0.0
stress
Choline chloride 90 mM
N.D.
-3.5
+0.5
+0.0
-0.4
nitrogen source
nitrite (N)
N.D.
+0.0
-2.9
-1.0
+0.5
stress
Aluminum chloride 0.3 mM
N.D.
-1.9
-0.3
-0.3
-0.8
stress
Vanillin 2 mM
N.D.
-1.0
-0.3
-0.2
-1.6
stress
2-Furfuraldehyde 0.05 vol%
N.D.
-1.0
-0.7
-0.6
-0.7
stress
Chlorate 75 mM
N.D.
+0.1
-0.5
-1.0
-1.4
nitrogen source
Parabanic Acid (N)
N.D.
-2.1
+0.1
-0.3
-0.4
stress
Def Chlorate 40 mM
N.D.
-1.2
-0.7
-1.1
+0.4
carbon source
butyrate (C)
N.D.
+0.3
-1.4
-1.4
-0.1
vitamin
No vitamins t2
N.D.
+0.5
-1.1
-1.1
-0.4
nutrient
Min media with glucose
N.D.
+0.4
-1.2
-0.8
-0.5
stress
Carbenicillin 0.008 mg/ml
N.D.
-1.7
-0.6
-0.2
+0.7
stress
Choline Lysine 20 mM
N.D.
-2.4
+0.2
+0.5
+0.1
stress
Choline Lysine 20 mM
N.D.
-2.7
+0.6
+0.5
+0.4
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
+1.4
-1.0
-1.3
+1.1
carbon source
L-tyrosine (C)
N.D.
-0.2
-0.8
+0.3
+2.4
stress
Fusidic 0.016 mg/ml
N.D.
+1.6
+0.5
+0.6
-0.9
carbon source
L-tyrosine (C)
N.D.
+0.3
-0.0
-0.2
+2.3
radiation
Ionizing radiation, 319.06 Gy,
N.D.
+0.8
+0.8
-0.3
+1.1
stress
Def Benzethonium chloride 0.008 mM
N.D.
+0.9
+0.8
+0.8
+0.5
stress
Cephalothin 0.04 mg/ml
N.D.
+1.9
+0.8
+0.6
-0.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
+1.9
+1.1
+0.8
-0.3
carbon source
propionate (C)
N.D.
-0.9
+8.5
+7.8
-0.1
carbon source
propionate (C)
N.D.
-0.5
+8.9
+8.3
-0.7
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