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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3163 and Psest_3164 are separated by 341 nucleotides
Psest_3164 and Psest_3165 are separated by 231 nucleotides
Psest_3165 and Psest_3166 are separated by 93 nucleotides
Psest_3166 and Psest_3167 are separated by 128 nucleotides
Psest_3163: Psest_3163 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 3,335,642 to 3,336,670
_3163
Psest_3164: Psest_3164 - Predicted esterase, at 3,337,012 to 3,337,668
_3164
Psest_3165: Psest_3165 - diguanylate cyclase (GGDEF) domain, at 3,337,900 to 3,338,760
_3165
Psest_3166: Psest_3166 - Superfamily II DNA and RNA helicases, at 3,338,854 to 3,340,287
_3166
Psest_3167: Psest_3167 - hypothetical protein, at 3,340,416 to 3,340,580
_3167
Group
Condition
Psest
_3163
Psest
_3164
Psest
_3165
Psest
_3166
Psest
_3167
temperature
LB 30C timecourse1 timepoint 3
-0.4
-0.5
-0.5
-1.1
-0.5
stress
Gentamicin 0.0016 mg/ml
-0.4
-0.3
-0.5
-1.0
-0.8
stress
Def Carbenicillin 0.008 mg/ml
-0.6
-0.3
-0.7
-0.7
-0.6
temperature
LB 30C timecourse2 timepoint 1
-0.5
-0.3
-0.4
-0.9
-0.6
nitrogen source
nitrite (N)
-0.2
-0.3
-0.3
-1.0
-0.7
nitrogen source
L-Glutamic (N)
-1.6
-0.3
-0.2
+0.2
-0.5
temperature
LB 30C timecourse1 timepoint 2
-0.5
-0.3
-0.3
-0.5
-0.3
nitrogen source
L-Glutamine (N)
-1.2
-0.4
-0.0
-0.1
-0.2
carbon source
RCH2 defined media
-0.5
+0.2
-0.3
-0.5
-0.8
nitrogen source
L-Glutamic (N)
-1.0
-0.3
-0.2
+0.1
-0.5
nitrogen source
L-Isoleucine (N)
-1.4
-0.0
-0.1
-0.0
-0.2
stress
Def Neomycin 0.0008 mg/ml
-0.4
-0.2
+0.1
-0.6
-0.6
stress
Lactate-nitrate; anaerobic sample3
-0.4
-0.3
-0.1
-0.4
-0.6
stress
Fusidic 0.016 mg/ml
-0.2
+0.1
-0.3
-0.6
-0.7
stress
Chlorate 75 mM
-0.3
+0.4
-0.5
-0.6
-0.6
stress
Cephalothin 0.04 mg/ml
-0.2
+0.3
-0.2
-0.7
-0.5
stress
Thallium(I) acetate 0.08 mg/ml
+0.2
+0.1
-0.1
-0.8
-0.5
nitrogen source
L-Isoleucine (N)
-1.1
-0.1
-0.2
+0.3
-0.0
nitrogen source
L-Isoleucine (N)
-1.2
-0.1
-0.1
+0.2
+0.2
stress
D-Cycloserine 0.032 mg/ml
-0.2
+0.6
-0.0
-0.8
-0.5
nitrogen source
L-Isoleucine (N)
-1.1
-0.2
+0.1
+0.4
+0.1
carbon source
L-tyrosine (C)
+0.4
-0.8
+0.1
+0.3
-0.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.0
+0.6
-0.1
-1.1
+0.1
carbon source
propionate (C)
-0.3
-0.5
+0.1
+0.9
-0.4
stress
Vancomycin 0.016 mg/ml
+0.5
+0.5
-0.0
-0.3
-0.7
stress
Nalidixic 0.00390625 mg/ml
+0.5
-0.7
+0.0
-0.4
+0.6
RCH2 grown on a colony of Serratia
-0.5
+0.2
+0.2
-0.1
+0.6
carbon source
propionate (C)
+0.6
-0.1
+0.1
+1.0
+0.0
stress
Def Chlorate 20 mM
+0.5
+0.2
+0.3
+0.5
+0.5
stress
Def Chlorate 40 mM
+0.5
+0.4
+0.4
+0.6
+0.2
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