Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3163 and Psest_3164 are separated by 341 nucleotidesPsest_3164 and Psest_3165 are separated by 231 nucleotidesPsest_3165 and Psest_3166 are separated by 93 nucleotidesPsest_3166 and Psest_3167 are separated by 128 nucleotides Psest_3163: Psest_3163 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 3,335,642 to 3,336,670 _3163 Psest_3164: Psest_3164 - Predicted esterase, at 3,337,012 to 3,337,668 _3164 Psest_3165: Psest_3165 - diguanylate cyclase (GGDEF) domain, at 3,337,900 to 3,338,760 _3165 Psest_3166: Psest_3166 - Superfamily II DNA and RNA helicases, at 3,338,854 to 3,340,287 _3166 Psest_3167: Psest_3167 - hypothetical protein, at 3,340,416 to 3,340,580 _3167
Group Condition Psest_3163 Psest_3164 Psest_3165 Psest_3166 Psest_3167
temperature LB 30C timecourse1 timepoint 3 -0.4 -0.5 -0.5 -1.1 -0.5
stress Gentamicin 0.0016 mg/ml -0.4 -0.3 -0.5 -1.0 -0.8
stress Def Carbenicillin 0.008 mg/ml -0.6 -0.3 -0.7 -0.7 -0.6
temperature LB 30C timecourse2 timepoint 1 -0.5 -0.3 -0.4 -0.9 -0.6
nitrogen source nitrite (N) -0.2 -0.3 -0.3 -1.0 -0.7
nitrogen source L-Glutamic (N) -1.6 -0.3 -0.2 +0.2 -0.5
temperature LB 30C timecourse1 timepoint 2 -0.5 -0.3 -0.3 -0.5 -0.3
nitrogen source L-Glutamine (N) -1.2 -0.4 -0.0 -0.1 -0.2
carbon source RCH2 defined media -0.5 +0.2 -0.3 -0.5 -0.8
nitrogen source L-Glutamic (N) -1.0 -0.3 -0.2 +0.1 -0.5
nitrogen source L-Isoleucine (N) -1.4 -0.0 -0.1 -0.0 -0.2
stress Def Neomycin 0.0008 mg/ml -0.4 -0.2 +0.1 -0.6 -0.6
stress Lactate-nitrate; anaerobic sample3 -0.4 -0.3 -0.1 -0.4 -0.6
stress Fusidic 0.016 mg/ml -0.2 +0.1 -0.3 -0.6 -0.7
stress Chlorate 75 mM -0.3 +0.4 -0.5 -0.6 -0.6
stress Cephalothin 0.04 mg/ml -0.2 +0.3 -0.2 -0.7 -0.5
stress Thallium(I) acetate 0.08 mg/ml +0.2 +0.1 -0.1 -0.8 -0.5
nitrogen source L-Isoleucine (N) -1.1 -0.1 -0.2 +0.3 -0.0
nitrogen source L-Isoleucine (N) -1.2 -0.1 -0.1 +0.2 +0.2
stress D-Cycloserine 0.032 mg/ml -0.2 +0.6 -0.0 -0.8 -0.5
nitrogen source L-Isoleucine (N) -1.1 -0.2 +0.1 +0.4 +0.1
carbon source L-tyrosine (C) +0.4 -0.8 +0.1 +0.3 -0.7
stress Def Benzalkonium Chloride 0.002 mg/ml -0.0 +0.6 -0.1 -1.1 +0.1
carbon source propionate (C) -0.3 -0.5 +0.1 +0.9 -0.4
stress Vancomycin 0.016 mg/ml +0.5 +0.5 -0.0 -0.3 -0.7
stress Nalidixic 0.00390625 mg/ml +0.5 -0.7 +0.0 -0.4 +0.6
RCH2 grown on a colony of Serratia -0.5 +0.2 +0.2 -0.1 +0.6
carbon source propionate (C) +0.6 -0.1 +0.1 +1.0 +0.0
stress Def Chlorate 20 mM +0.5 +0.2 +0.3 +0.5 +0.5
stress Def Chlorate 40 mM +0.5 +0.4 +0.4 +0.6 +0.2
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