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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0309 and Psest_0310 are separated by 14 nucleotides
Psest_0310 and Psest_0311 overlap by 4 nucleotides
Psest_0311 and Psest_0312 are separated by 93 nucleotides
Psest_0312 and Psest_0313 are separated by 236 nucleotides
Psest_0309: Psest_0309 - RND family efflux transporter, MFP subunit, at 328,340 to 329,482
_0309
Psest_0310: Psest_0310 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 329,497 to 332,634
_0310
Psest_0311: Psest_0311 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 332,631 to 334,055
_0311
Psest_0312: Psest_0312 - Superfamily II DNA and RNA helicases, at 334,149 to 335,966
_0312
Psest_0313: Psest_0313 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 336,203 to 337,132
_0313
Group
Condition
Psest
_0309
Psest
_0310
Psest
_0311
Psest
_0312
Psest
_0313
stress
Doxycycline hyclate 0.0002 mg/ml
-4.9
-3.9
-4.3
-1.3
-0.4
stress
Fusidic 0.016 mg/ml
-4.2
-3.9
-3.9
-0.3
-0.0
stress
Def Carbenicillin 0.008 mg/ml
-3.9
-3.7
-2.0
-0.0
-2.5
stress
Nalidixic 0.001 mg/ml
-4.1
-3.4
-2.2
-1.1
-1.3
stress
Fusidic 0.016 mg/ml
-4.1
-3.4
-4.4
+0.1
+0.1
stress
Def Nalidixic 0.001 mg/ml
-2.8
-2.5
-2.4
-0.5
-3.1
stress
Carbenicillin 0.008 mg/ml
-4.0
-3.0
-3.2
-1.9
+0.7
stress
Def Cephalothin 0.04 mg/ml
-2.5
-3.3
-1.7
-1.0
-2.7
stress
Def Carbenicillin 0.02 mg/ml
-4.0
-3.8
-1.9
+0.4
-1.5
carbon source
L-tyrosine (C)
-2.4
-1.9
-1.1
-2.9
-2.6
stress
Fusidic 0.016 mg/ml
-4.4
-2.6
-2.8
-0.2
-0.7
stress
Carbenicillin 0.008 mg/ml
-4.2
-3.2
-2.9
-1.3
+1.1
stress
Furfuryl Alcohol 0.3 vol%
-4.4
-3.3
-2.4
-0.5
+0.3
stress
Carbenicillin 0.0065 mg/ml
-3.1
-3.3
-3.4
-1.3
+1.0
stress
Carbenicillin 0.0065 mg/ml
-4.3
-1.9
-2.8
-1.6
+0.7
stress
syringaldehyde 4 mM
-4.5
-2.8
-2.1
-0.4
+0.0
stress
Def Cephalothin 0.08 mg/ml
-1.2
-3.1
-1.5
-1.2
-2.6
stress
Polymyxin B sulfate 0.0001 mg/ml
-4.6
-3.0
-1.7
-0.5
+0.2
stress
Def Fusidic 0.032 mg/ml
-2.2
-2.7
-2.2
-0.1
-2.5
carbon source
D-Fructose (C)
-3.0
-1.3
-0.9
+0.4
-4.7
stress
Def Fusidic 0.064 mg/ml
-2.4
-3.3
-1.6
+0.2
-2.1
stress
Def Nalidixic 0.0005 mg/ml
-3.4
-1.8
-1.1
+0.3
-2.9
carbon source
L-tyrosine (C)
-1.3
-1.4
-0.2
-2.2
-3.7
stress
Choline Lysine 20 mM
-2.8
-2.9
-1.2
+0.1
-2.0
stress
Cephalothin 0.04 mg/ml
-2.6
-2.7
-2.2
-1.2
+0.2
stress
Benzalkonium Chloride 0.002 mg/ml
-4.5
-2.6
-0.9
+0.6
+0.4
stress
nitrate 250 mM
-3.1
-2.4
-1.7
+2.0
-1.6
stress
L-Lysine 200 mM
-3.9
-2.3
-3.0
+1.9
+1.3
stress
L-Lysine 200 mM
-4.0
-2.4
-1.2
+2.0
+1.6
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.2
+1.9
+1.1
+2.9
-1.8
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