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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3151 and Psest_3153 are separated by 278 nucleotides
Psest_3153 and Psest_3154 overlap by 10 nucleotides
Psest_3154 and Psest_3155 are separated by 639 nucleotides
Psest_3155 and Psest_3156 are separated by 149 nucleotides
Psest_3151: Psest_3151 - hypothetical protein, at 3,321,918 to 3,322,388
_3151
Psest_3153: Psest_3153 - hypothetical protein, at 3,322,667 to 3,322,885
_3153
Psest_3154: Psest_3154 - hypothetical protein, at 3,322,876 to 3,324,540
_3154
Psest_3155: Psest_3155 - hypothetical protein, at 3,325,180 to 3,325,464
_3155
Psest_3156: Psest_3156 - Site-specific recombinases, DNA invertase Pin homologs, at 3,325,614 to 3,326,156
_3156
Group
Condition
Psest
_3151
Psest
_3153
Psest
_3154
Psest
_3155
Psest
_3156
carbon source
L-tyrosine (C)
-1.5
N.D.
-0.1
-0.6
-0.9
RCH2 grown on a colony of 8R2A
-0.4
N.D.
-0.3
-1.8
-0.6
temperature
LB 30C timecourse1 timepoint 3
-1.0
N.D.
-0.4
-0.6
-0.5
RCH2 grown on a colony of N2C3
-1.1
N.D.
-0.5
-0.3
-0.6
radiation
Ionizing radiation, 319.06 Gy,
-2.0
N.D.
-0.2
+0.1
-0.3
stress
Cholin acetate 40 mM
-1.7
N.D.
+0.0
-0.2
-0.5
stress
Benzethonium chloride 0.01 mM
-1.3
N.D.
-0.2
-0.9
+0.1
stress
nitrate 250 mM
-0.8
N.D.
-0.7
-0.6
-0.2
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
-1.6
N.D.
-0.4
-0.3
+0.2
stress
Chlorate 75 mM
-0.8
N.D.
-0.8
-0.6
+0.3
stress
Benzethonium chloride 0.01 mM
-2.0
N.D.
+0.1
+0.5
-0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.5
N.D.
+0.1
-0.7
+0.5
stress
Carbenicillin 0.0065 mg/ml
-1.0
N.D.
+0.3
+0.1
-1.0
stress
Fusidic 0.016 mg/ml
+0.3
N.D.
-0.5
-1.8
+0.7
stress
Def Carbenicillin 0.008 mg/ml
+0.2
N.D.
-0.9
-0.8
+0.5
stress
Furfuryl Alcohol 0.05 vol%
-1.9
N.D.
+0.5
+0.5
-0.0
RCH2 grown on a colony of N2A2
-1.3
N.D.
-0.2
+0.7
-0.0
stress
nitrate 200 mM
-1.5
N.D.
+0.3
+0.2
+0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.4
N.D.
+0.3
+0.7
-0.4
stress
Thallium(I) acetate 0.09 mg/ml
+0.6
N.D.
+0.2
-0.3
-1.1
nitrogen source
nitrite (N)
-1.3
N.D.
-0.0
+0.2
+0.5
RCH2 grown on a colony of N2F3
-0.7
N.D.
+0.2
+1.2
-0.8
stress
perchlorate 25 mM
-0.8
N.D.
+0.0
+1.1
-0.5
RCH2 grown on a colony of Serratia
-0.8
N.D.
+0.1
+1.0
-0.3
carbon source
RCH2 defined media
+0.5
N.D.
-0.5
-0.6
+0.6
nitrogen source
L-Glutamic (N)
+0.9
N.D.
-0.5
-1.0
+0.6
stress
2-Furfuraldehyde 0.05 vol%
+0.9
N.D.
+0.2
-1.2
+0.3
stress
Choline chloride 90 mM
+1.0
N.D.
+0.3
-0.1
-0.8
stress
Zinc 0.12 mM
-0.7
N.D.
+0.1
+1.2
-0.1
stress
Spectinomycin 0.00625 mg/ml
+0.9
N.D.
-0.2
+0.8
+0.5
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