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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3142 and Psest_3143 are separated by 51 nucleotides
Psest_3143 and Psest_3144 are separated by 91 nucleotides
Psest_3144 and Psest_3145 are separated by 626 nucleotides
Psest_3145 and Psest_3146 overlap by 4 nucleotides
Psest_3142: Psest_3142 - Uncharacterized protein conserved in bacteria, at 3,316,222 to 3,316,725
_3142
Psest_3143: Psest_3143 - Uncharacterized protein conserved in bacteria, at 3,316,777 to 3,317,094
_3143
Psest_3144: Psest_3144 - Phage integrase family., at 3,317,186 to 3,318,724
_3144
Psest_3145: Psest_3145 - hypothetical protein, at 3,319,351 to 3,319,635
_3145
Psest_3146: Psest_3146 - hypothetical protein, at 3,319,632 to 3,319,844
_3146
Group
Condition
Psest
_3142
Psest
_3143
Psest
_3144
Psest
_3145
Psest
_3146
RCH2 grown on a colony of N2C3
-0.1
-0.3
+0.1
-1.4
-4.2
stress
nitrate 250 mM
+0.3
-0.4
-0.4
-0.5
-4.1
stress
Cobalt chloride 0.06 mM
-0.0
-0.4
-0.1
-1.3
-2.3
stress
Def Carbenicillin 0.008 mg/ml
-1.0
-0.1
-0.8
-0.8
-1.4
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.4
-1.0
+0.2
-3.5
-0.1
stress
Def Cephalothin 0.04 mg/ml
-0.3
-0.1
-0.1
-3.5
+0.4
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.3
-0.1
-0.1
-0.8
-2.2
stress
Nalidixic 0.00390625 mg/ml
-0.5
-0.9
+0.1
-0.7
-1.4
temperature
LB 30C timecourse1 timepoint 3
-0.4
+0.0
-0.4
-0.3
-2.2
RCH2 grown on a colony of ecoli
-0.1
-0.1
+0.1
-1.1
-2.0
stress
Thallium(I) acetate 0.08 mg/ml
+0.1
-0.4
-0.0
-1.0
-1.9
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.2
+0.0
-0.3
-2.8
+0.1
stress
Carbenicillin 0.0065 mg/ml
+0.0
+0.5
+0.0
-1.1
-2.5
stress
Dimethyl Sulfoxide 5 vol%
+0.3
+0.1
-0.1
-1.9
-1.4
carbon source
Glycerol (C)
+0.1
+0.3
+0.1
-0.6
-2.8
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.0
-0.3
-0.1
+0.2
-2.5
stress
Def Neomycin 0.0008 mg/ml
-1.2
+0.2
-0.2
+0.4
-1.4
stress
Neomycin 0.004 mg/ml
+0.3
+0.1
-0.0
-3.0
+0.4
RCH2 grown on a colony of Serratia
+0.0
+0.6
+0.1
-0.4
-2.1
vitamin
With vitamins t2
-0.1
+0.4
-0.0
+0.8
-2.9
stress
Gentamicin 0.0016 mg/ml
+0.7
+0.2
-0.6
-0.3
-1.8
carbon source
L-tyrosine (C)
+0.1
-0.9
-0.1
+1.2
-1.1
stress
Aluminum chloride 0.3 mM
-0.0
+0.1
+0.0
+1.5
-1.9
carbon source
propionate (C)
-0.4
+0.6
-0.1
-1.0
+1.2
vitamin
With vitamins t1
-0.1
+0.6
+0.1
+1.1
-1.4
stress
Benzethonium chloride 0.01 mM
+0.1
-0.4
+0.1
+1.8
-1.1
RCH2 grown on a colony of N2F3
-0.5
+0.3
-0.4
-0.6
+1.8
stress
L-Lysine 200 mM
+0.8
+0.6
+0.1
+0.6
-1.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.1
+0.3
+0.1
+1.6
+1.2
stress
nitrate 200 mM
+0.4
-0.3
+0.2
+1.6
+1.4
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