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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3110 and Psest_3111 are separated by 3 nucleotides
Psest_3111 and Psest_3112 are separated by 232 nucleotides
Psest_3112 and Psest_3113 overlap by 4 nucleotides
Psest_3113 and Psest_3114 overlap by 4 nucleotides
Psest_3110: Psest_3110 - Enoyl-CoA hydratase/carnithine racemase, at 3,287,593 to 3,288,696
_3110
Psest_3111: Psest_3111 - hypothetical protein, at 3,288,700 to 3,289,116
_3111
Psest_3112: Psest_3112 - electron transport complex, RnfABCDGE type, A subunit, at 3,289,349 to 3,289,933
_3112
Psest_3113: Psest_3113 - electron transport complex, RnfABCDGE type, B subunit, at 3,289,930 to 3,290,505
_3113
Psest_3114: Psest_3114 - electron transport complex, RnfABCDGE type, C subunit, at 3,290,502 to 3,293,180
_3114
Group
Condition
Psest
_3110
Psest
_3111
Psest
_3112
Psest
_3113
Psest
_3114
stress
Def Chloride 400 mM
+0.1
-0.0
-1.6
-4.0
-1.6
stress
Spectinomycin 0.00625 mg/ml
-0.2
-0.9
-1.5
-3.0
-1.2
stress
2-Furfuraldehyde 0.05 vol%
+0.5
-0.1
-1.3
-3.6
-1.5
stress
Carbenicillin 0.008 mg/ml
+0.4
-0.1
-1.9
-2.2
-1.6
anaerobic
Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
-0.2
+0.1
-0.6
-3.1
-1.5
anaerobic
Nitrite/ lactate media with Nitrite 20mM
+0.0
-0.1
-1.0
-2.5
-1.5
stress
Spectinomycin 0.00625 mg/ml
-0.2
+0.1
-2.1
-1.4
-1.3
stress
Lactate-nitrate; anaerobic; cadmium stress sample1
+0.5
+0.2
-2.1
-2.4
-0.8
RCH2 grown on a colony of Serratia
-0.3
+0.4
-1.7
-1.1
-1.7
stress
Lactate-nitrate; anaerobic; cadmium stress sample3
+0.5
-0.4
-1.2
-1.8
-1.2
carbon source
propionate (C)
-0.7
-0.2
+2.0
+2.3
+0.5
stress
Cobalt chloride 0.05 mM
-0.7
-0.4
+1.5
+2.5
+1.5
stress
D-Cycloserine 0.032 mg/ml
-0.6
-0.1
+1.7
+1.4
+2.0
stress
Furfuryl Alcohol 0.05 vol%
-0.6
+0.4
+1.7
+1.6
+1.7
anaerobic
nitrate reduction - anaerobic
+0.0
+0.1
+1.5
+1.8
+1.6
stress
nitrate 200 mM
+0.5
-0.7
+1.5
+2.4
+1.3
stress
Choline chloride 90 mM
-0.1
+0.4
+1.6
+1.6
+1.5
stress
Gentamicin 0.0016 mg/ml
+0.1
-0.3
+1.7
+1.7
+2.0
stress
Paraquat dichloride 0.015 mg/ml
+0.1
-0.0
+1.6
+1.8
+2.0
stress
Choline Lysine 20 mM
-0.3
-0.0
+1.6
+2.5
+1.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.3
+0.1
+1.9
+1.7
+2.0
stress
D-Cycloserine 0.032 mg/ml
-0.2
+0.1
+2.3
+1.5
+2.4
carbon source
L-tyrosine (C)
-0.3
+0.1
+2.3
+2.1
+2.0
stress
Choline Lysine 20 mM
-0.1
+0.1
+2.3
+2.3
+1.9
carbon source
L-tyrosine (C)
-0.3
+1.1
+2.0
+1.9
+2.3
stress
Bacitracin 0.25 mg/ml
+0.3
-0.1
+3.1
+2.8
+3.1
stress
Bacitracin 0.25 mg/ml
+0.5
+0.3
+3.3
+3.1
+2.9
stress
Def Chlorate 40 mM
+0.2
-0.6
+3.5
+3.6
+3.6
stress
Def Chlorate 20 mM
-0.0
-0.2
+3.9
+4.2
+4.1
stress
Chlorate 75 mM
-1.6
-1.4
+5.4
+5.6
+5.1
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