Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3089 and Psest_3090 overlap by 8 nucleotidesPsest_3090 and Psest_3091 are separated by 48 nucleotidesPsest_3091 and Psest_3092 overlap by 8 nucleotidesPsest_3092 and Psest_3093 overlap by 4 nucleotides Psest_3089: Psest_3089 - pyridoxine 5'-phosphate synthase, at 3,268,592 to 3,269,338 _3089 Psest_3090: Psest_3090 - DNA repair protein RecO, at 3,269,331 to 3,270,020 _3090 Psest_3091: Psest_3091 - GTP-binding protein Era, at 3,270,069 to 3,270,980 _3091 Psest_3092: Psest_3092 - ribonuclease III, bacterial, at 3,270,973 to 3,271,662 _3092 Psest_3093: Psest_3093 - hypothetical protein, at 3,271,659 to 3,272,036 _3093
Group Condition Psest_3089 Psest_3090 Psest_3091 Psest_3092 Psest_3093
stress Cisplatin 0.003 mg/ml N.D. -5.4 N.D. -2.2 +0.0
stress Cisplatin 0.0016 mg/ml N.D. -4.7 N.D. -2.0 -0.1
stress Cisplatin 0.003 mg/ml N.D. -5.1 N.D. -1.5 +0.2
stress Def Cisplatin 0.0002 mg/ml N.D. -4.7 N.D. -1.0 +0.1
stress Cisplatin 0.0016 mg/ml N.D. -4.2 N.D. -1.1 -0.2
stress Benzethonium chloride 0.0125 mM N.D. -0.5 N.D. -4.7 -0.1
temperature LB 30C timecourse1 timepoint 3 N.D. -1.4 N.D. -3.8 +0.1
stress Spectinomycin 0.00625 mg/ml N.D. -0.2 N.D. -4.9 +0.1
stress Benzethonium chloride 0.0125 mM N.D. -0.3 N.D. -4.8 +0.2
lb LB N.D. -1.0 N.D. -3.1 -0.1
stress Choline Lysine 20 mM N.D. -0.4 N.D. -4.2 +0.3
stress Nickel (II) chloride 0.8 mM N.D. -0.8 N.D. -3.4 +0.3
stress 5-Hydroxymethylfurfural 5 mM N.D. -0.3 N.D. -3.6 +0.2
stress Fusidic 0.016 mg/ml N.D. -1.2 N.D. -2.5 +0.1
stress Lactate-nitrate; anaerobic; dichromate stress sample3 N.D. -2.4 N.D. -1.5 +0.4
temperature LB 30C timecourse1 timepoint 1 N.D. -0.6 N.D. -3.0 +0.0
stress Nalidixic 0.001 mg/ml N.D. -0.5 N.D. -3.0 +0.1
stress Cobalt chloride 0.06 mM N.D. -0.4 N.D. -3.0 +0.0
stress Lactate-nitrate; anaerobic; dichromate stress sample1 N.D. -2.3 N.D. -1.4 +0.3
nutrient L-Histidine N.D. -0.9 N.D. -2.6 +0.3
stress Lactate-nitrate; anaerobic; dichromate stress sample2 N.D. -1.7 N.D. -1.9 +0.3
stress sodium fluoride 6.25 mM N.D. -0.9 N.D. -2.4 +0.2
stress 1-ethyl-3-methylimidazolium acetate 40 mM N.D. -0.6 N.D. -2.7 +0.2
stress nitrate 250 mM N.D. -1.4 N.D. -2.0 +0.3
stress Cephalothin 0.04 mg/ml N.D. -0.9 N.D. -2.3 +0.4
stress Def Vancomycin 0.016 mg/ml N.D. -0.1 N.D. -3.1 +0.7
nitrogen source L-Alanine (N) N.D. +0.6 N.D. -2.8 +0.5
nitrogen source L-Isoleucine (N) N.D. -0.4 N.D. +4.1 -0.8
nitrogen source L-Isoleucine (N) N.D. -0.1 N.D. +3.6 +0.2
nitrogen source L-Isoleucine (N) N.D. -0.2 N.D. +4.6 -0.1
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