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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3083 and Psest_3084 are separated by 60 nucleotides
Psest_3084 and Psest_3085 overlap by 4 nucleotides
Psest_3085 and Psest_3086 are separated by 12 nucleotides
Psest_3086 and Psest_3087 are separated by 134 nucleotides
Psest_3083: Psest_3083 - hypothetical protein, at 3,264,562 to 3,265,131
_3083
Psest_3084: Psest_3084 - methyltransferase, putative, at 3,265,192 to 3,265,935
_3084
Psest_3085: Psest_3085 - methyltransferase, putative, at 3,265,932 to 3,266,894
_3085
Psest_3086: Psest_3086 - hypothetical protein, at 3,266,907 to 3,267,182
_3086
Psest_3087: Psest_3087 - Transcriptional regulator, at 3,267,317 to 3,268,273
_3087
Group
Condition
Psest
_3083
Psest
_3084
Psest
_3085
Psest
_3086
Psest
_3087
nitrogen source
L-Isoleucine (N)
-0.6
-0.6
-1.3
-1.6
-0.4
stress
sodium fluoride 6.25 mM
-0.1
-1.1
-1.1
-0.7
-0.5
stress
Def Cephalothin 0.08 mg/ml
-0.5
-1.0
-0.8
-0.6
-0.6
carbon source
D-Fructose (C)
-0.1
-1.3
-1.1
-0.2
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.3
-1.5
-0.7
-0.8
stress
A22 0.005 mg/ml
-0.2
-0.3
-0.3
-1.0
-0.8
stress
Def Phosphomycin 0.125 mg/ml
-0.2
-0.5
-0.4
-0.4
-1.0
stress
acetate 80 mM
-0.1
-1.5
-0.6
+0.3
-0.5
stress
Def Fusidic 0.064 mg/ml
-0.4
-1.3
-0.3
-0.3
-0.2
carbon source
RCH2 defined media
-0.4
-0.8
-0.9
+0.1
-0.3
nutrient
L-Histidine
-0.3
-1.4
-0.4
-0.3
+0.4
stress
A22 0.005 mg/ml
+0.3
-1.7
+0.1
-0.0
-0.2
stress
Paraquat dichloride 0.015 mg/ml
+0.4
-2.1
+0.1
+0.0
-0.1
stress
Choline chloride 90 mM
+0.2
-2.2
+0.2
-0.0
+0.4
carbon source
L-Proline (C)
-0.1
-1.6
-0.2
+0.3
+0.3
stress
Def Benzethonium chloride 0.008 mM
-0.6
+0.6
-0.5
-0.5
+0.1
nitrogen source
nitrite (N)
-0.6
-0.1
-0.1
-0.7
+0.9
RCH2 grown on a colony of N2A2
-0.4
+0.9
-0.8
-0.4
+0.1
stress
nitrite 2.5 mM
-0.2
-1.3
+0.0
-0.2
+1.0
RCH2 grown on a colony of 8R2A
+0.6
-0.5
-0.5
-0.3
+0.6
carbon source
butyrate (C)
-0.2
+0.9
-0.7
-0.6
+0.5
RCH2 grown on a colony of N2F3
+0.9
+0.0
+0.3
-0.7
-0.5
RCH2 grown on a colony of N2F3
-0.2
+1.4
-0.3
-0.8
+0.3
stress
Chlorate 75 mM
+0.4
-1.2
+0.6
+0.5
+0.2
stress
Nalidixic 0.00390625 mg/ml
+0.5
+1.2
-0.0
-0.5
-0.5
nitrogen source
L-Valine (N)
+0.4
+1.4
+0.0
-0.4
+0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.2
+1.3
-0.1
+0.6
+0.3
temperature
LB 30C timecourse1 timepoint 2
+0.4
+1.5
-0.3
+0.3
+0.5
stress
perchlorate 25 mM
+0.9
+0.0
+0.9
+0.5
+0.6
stress
Def Carbenicillin 0.02 mg/ml
+0.5
+0.9
+0.5
+0.7
+0.3
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