Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3042 and Psest_3043 are separated by 10 nucleotidesPsest_3043 and Psest_3044 are separated by 102 nucleotidesPsest_3044 and Psest_3045 are separated by 330 nucleotidesPsest_3045 and Psest_3046 are separated by 104 nucleotides Psest_3042: Psest_3042 - Nitrate reductase cytochrome c-type subunit, at 3,225,625 to 3,226,113 _3042 Psest_3043: Psest_3043 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family, at 3,226,124 to 3,226,720 _3043 Psest_3044: Psest_3044 - deoxycytidine triphosphate deaminase, at 3,226,823 to 3,227,389 _3044 Psest_3045: Psest_3045 - Cold shock proteins, at 3,227,720 to 3,227,929 _3045 Psest_3046: Psest_3046 - ATPases involved in chromosome partitioning, at 3,228,034 to 3,229,128 _3046
Group Condition Psest_3042 Psest_3043 Psest_3044 Psest_3045 Psest_3046
stress Spectinomycin 0.00625 mg/ml -2.6 +0.0 -1.0 -3.5 N.D.
RCH2 grown on a colony of Serratia -2.0 -0.3 -0.4 -2.4 N.D.
stress Cobalt chloride 0.06 mM -1.8 -0.4 -0.9 -2.1 N.D.
stress 2-Furfuraldehyde 0.05 vol% -1.3 -0.3 -0.7 -2.3 N.D.
stress methylglyoxal 0.0016 vol% -0.8 -0.6 -1.6 -1.6 N.D.
temperature LB 30C timecourse1 timepoint 3 -0.8 -0.0 -1.2 -2.1 N.D.
stress Cobalt chloride 0.08 mM -2.0 +0.3 -0.8 -1.6 N.D.
stress Nalidixic 0.00390625 mg/ml -3.0 +0.3 -0.0 -1.2 N.D.
carbon source L-Malic (C) -2.3 -0.1 -0.3 -0.8 N.D.
stress Cobalt chloride 0.06 mM -1.9 +0.0 -0.5 -1.1 N.D.
stress syringaldehyde 3 mM -1.8 -0.1 +0.4 -1.8 N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -2.7 +0.2 +0.1 -0.7 N.D.
RCH2 grown on a colony of Serratia -1.8 +0.3 -0.5 -1.1 N.D.
carbon source L-tyrosine (C) -0.4 +0.1 +0.4 -3.1 N.D.
anaerobic Nitrite/ lactate media with Nitrite 20mM -1.2 +0.5 -0.5 -1.4 N.D.
metal limitation Lactate-nitrite; anaerobic; with copper; sample3 -0.8 +0.6 -1.2 -1.1 N.D.
stress Def 2-Furfuraldehyde 0.032 vol% +0.7 +0.9 -1.4 -2.6 N.D.
stress Bacitracin 0.25 mg/ml -2.3 +0.4 +0.5 +0.6 N.D.
stress nitrite 2.5 mM -1.7 +0.5 -0.6 +1.5 N.D.
stress Def Carbenicillin 0.02 mg/ml -1.9 +0.3 +0.7 +1.7 N.D.
stress Neomycin 0.004 mg/ml -1.4 -0.1 +0.6 +2.6 N.D.
stress nitrate 250 mM -0.5 +0.6 +1.1 +1.8 N.D.
stress Lactate-nitrate; anaerobic; dichromate stress sample1 +1.9 +0.4 -0.4 +1.4 N.D.
stress nitrate 200 mM +0.1 +0.6 +1.1 +1.9 N.D.
stress Neomycin 0.004 mg/ml +0.4 +0.2 +0.6 +2.8 N.D.
stress Phosphomycin 0.012 mg/ml +0.9 +0.2 +0.8 +2.2 N.D.
stress Phosphomycin 0.012 mg/ml +2.2 +0.2 +0.6 +1.5 N.D.
stress Carbenicillin 0.008 mg/ml +1.9 +0.2 +1.5 +1.5 N.D.
stress Carbenicillin 0.008 mg/ml +1.7 +0.9 +1.0 +1.7 N.D.
RCH2 grown on a colony of N2C3 +3.6 +0.5 +0.7 +2.3 N.D.
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