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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3041 and Psest_3042 are separated by 13 nucleotides
Psest_3042 and Psest_3043 are separated by 10 nucleotides
Psest_3043 and Psest_3044 are separated by 102 nucleotides
Psest_3044 and Psest_3045 are separated by 330 nucleotides
Psest_3041: Psest_3041 - periplasmic nitrate reductase, large subunit, at 3,223,107 to 3,225,611
_3041
Psest_3042: Psest_3042 - Nitrate reductase cytochrome c-type subunit, at 3,225,625 to 3,226,113
_3042
Psest_3043: Psest_3043 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family, at 3,226,124 to 3,226,720
_3043
Psest_3044: Psest_3044 - deoxycytidine triphosphate deaminase, at 3,226,823 to 3,227,389
_3044
Psest_3045: Psest_3045 - Cold shock proteins, at 3,227,720 to 3,227,929
_3045
Group
Condition
Psest
_3041
Psest
_3042
Psest
_3043
Psest
_3044
Psest
_3045
stress
Spectinomycin 0.00625 mg/ml
-0.4
-2.6
+0.0
-1.0
-3.5
RCH2 grown on a colony of Serratia
-0.3
-2.0
-0.3
-0.4
-2.4
stress
Cobalt chloride 0.06 mM
-0.0
-1.8
-0.4
-0.9
-2.1
stress
2-Furfuraldehyde 0.05 vol%
+0.0
-1.3
-0.3
-0.7
-2.3
stress
methylglyoxal 0.0016 vol%
+0.1
-0.8
-0.6
-1.6
-1.6
temperature
LB 30C timecourse1 timepoint 3
-0.2
-0.8
-0.0
-1.2
-2.1
stress
Cobalt chloride 0.08 mM
-0.0
-2.0
+0.3
-0.8
-1.6
stress
Nalidixic 0.00390625 mg/ml
+0.2
-3.0
+0.3
-0.0
-1.2
stress
Cobalt chloride 0.06 mM
-0.2
-1.9
+0.0
-0.5
-1.1
RCH2 grown on a colony of Serratia
-0.1
-1.8
+0.3
-0.5
-1.1
stress
syringaldehyde 3 mM
+0.0
-1.8
-0.1
+0.4
-1.8
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.0
-2.7
+0.2
+0.1
-0.7
carbon source
L-tyrosine (C)
+0.0
-0.4
+0.1
+0.4
-3.1
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.2
-1.2
+0.5
-0.5
-1.4
metal limitation
Lactate-nitrite; anaerobic; with copper; sample3
+0.0
-0.8
+0.6
-1.2
-1.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.0
+0.7
+0.9
-1.4
-2.6
stress
Bacitracin 0.25 mg/ml
-0.1
-2.3
+0.4
+0.5
+0.6
stress
nitrite 2.5 mM
+0.2
-1.7
+0.5
-0.6
+1.5
stress
Def Carbenicillin 0.02 mg/ml
-0.1
-1.9
+0.3
+0.7
+1.7
stress
Neomycin 0.004 mg/ml
+0.1
-1.4
-0.1
+0.6
+2.6
stress
nitrate 250 mM
+0.2
-0.5
+0.6
+1.1
+1.8
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
+0.2
+1.9
+0.4
-0.4
+1.4
stress
nitrate 200 mM
+0.4
+0.6
+0.3
+0.8
+1.6
stress
Neomycin 0.004 mg/ml
-0.0
+0.4
+0.2
+0.6
+2.8
stress
nitrate 200 mM
+0.2
+0.1
+0.6
+1.1
+1.9
stress
Phosphomycin 0.012 mg/ml
+0.2
+0.9
+0.2
+0.8
+2.2
stress
Phosphomycin 0.012 mg/ml
+0.3
+2.2
+0.2
+0.6
+1.5
stress
Carbenicillin 0.008 mg/ml
+0.0
+1.7
+0.9
+1.0
+1.7
stress
Carbenicillin 0.008 mg/ml
+0.0
+1.9
+0.2
+1.5
+1.5
RCH2 grown on a colony of N2C3
-0.1
+3.6
+0.5
+0.7
+2.3
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