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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_3039 and Psest_3040 are separated by 49 nucleotides
Psest_3040 and Psest_3041 overlap by 1 nucleotides
Psest_3041 and Psest_3042 are separated by 13 nucleotides
Psest_3042 and Psest_3043 are separated by 10 nucleotides
Psest_3039: Psest_3039 - periplasmic nitrate reductase, NapE protein, at 3,222,624 to 3,222,803
_3039
Psest_3040: Psest_3040 - Uncharacterized protein involved in formation of periplasmic nitrate reductase, at 3,222,853 to 3,223,107
_3040
Psest_3041: Psest_3041 - periplasmic nitrate reductase, large subunit, at 3,223,107 to 3,225,611
_3041
Psest_3042: Psest_3042 - Nitrate reductase cytochrome c-type subunit, at 3,225,625 to 3,226,113
_3042
Psest_3043: Psest_3043 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family, at 3,226,124 to 3,226,720
_3043
Group
Condition
Psest
_3039
Psest
_3040
Psest
_3041
Psest
_3042
Psest
_3043
stress
Def Carbenicillin 0.02 mg/ml
-4.0
-0.1
-0.1
-1.9
+0.3
RCH2 grown on a colony of 8R2A
-3.0
-0.7
-0.3
-1.6
+0.1
stress
Nalidixic 0.00390625 mg/ml
-1.4
-0.8
+0.2
-3.0
+0.3
RCH2 grown on a colony of Serratia
-0.3
-1.0
-0.3
-2.0
-0.3
stress
A22 0.002 mg/ml
-1.1
-0.7
+0.1
-1.9
-0.3
stress
Spectinomycin 0.00625 mg/ml
-0.6
-0.2
-0.4
-2.6
+0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.2
-0.6
+0.1
-1.6
-0.2
RCH2 grown on a colony of N2F3
-4.1
+0.1
+0.1
+1.0
-0.5
stress
Spectinomycin 0.00625 mg/ml
-2.0
+0.2
+0.1
-1.3
-0.4
stress
Vanillin 2 mM
-1.9
-0.5
-0.1
-1.0
+0.1
stress
Nickel (II) chloride 1 mM
-2.6
+0.3
-0.0
-0.5
-0.6
nitrogen source
L-Isoleucine (N)
-1.8
+0.1
+0.0
-1.6
-0.1
carbon source
L-Glutamine (C)
-1.1
-0.1
-0.0
-1.9
-0.1
nitrogen source
L-Valine (N)
-1.8
-0.5
+0.2
-0.8
+0.0
stress
Cobalt chloride 0.06 mM
-1.0
+0.1
-0.2
-1.9
+0.0
stress
Benzethonium chloride 0.0125 mM
-1.2
+0.2
+0.2
-1.3
-0.3
stress
Cobalt chloride 0.08 mM
-0.8
+0.2
-0.0
-2.0
+0.3
stress
Bacitracin 0.25 mg/ml
-0.7
+0.4
-0.1
-2.3
+0.4
stress
Neomycin 0.004 mg/ml
-3.0
+0.1
-0.0
+0.4
+0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.5
+0.1
+0.0
-2.7
+0.2
RCH2 grown on a colony of N2A2
+0.9
-0.5
-0.1
-1.9
+0.3
stress
Choline chloride 90 mM
+1.4
-0.5
+0.1
-1.3
-0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.4
-0.6
+0.0
+0.7
+0.9
vitamin
With vitamins t2
-1.7
+0.1
+0.1
+1.1
-0.1
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
+1.6
-0.4
+0.2
-0.6
+0.3
stress
A22 0.005 mg/ml
-1.1
+0.2
+0.2
+1.8
+0.4
stress
Fusidic 0.016 mg/ml
+0.8
-0.6
+0.2
+1.4
+0.4
stress
acetate 80 mM
+1.4
+0.3
+0.0
+1.0
+0.3
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
+1.1
-0.2
+0.2
+1.9
+0.4
RCH2 grown on a colony of N2C3
+1.7
-0.1
-0.1
+3.6
+0.5
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