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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3037 and Psest_3038 are separated by 16 nucleotides
Psest_3038 and Psest_3039 are separated by 198 nucleotides
Psest_3039 and Psest_3040 are separated by 49 nucleotides
Psest_3040 and Psest_3041 overlap by 1 nucleotides
Psest_3037: Psest_3037 - Uncharacterized protein conserved in bacteria, at 3,220,736 to 3,221,230
_3037
Psest_3038: Psest_3038 - Arabinose efflux permease, at 3,221,247 to 3,222,425
_3038
Psest_3039: Psest_3039 - periplasmic nitrate reductase, NapE protein, at 3,222,624 to 3,222,803
_3039
Psest_3040: Psest_3040 - Uncharacterized protein involved in formation of periplasmic nitrate reductase, at 3,222,853 to 3,223,107
_3040
Psest_3041: Psest_3041 - periplasmic nitrate reductase, large subunit, at 3,223,107 to 3,225,611
_3041
Group
Condition
Psest
_3037
Psest
_3038
Psest
_3039
Psest
_3040
Psest
_3041
stress
Def Carbenicillin 0.02 mg/ml
-0.5
-0.0
-4.0
-0.1
-0.1
RCH2 grown on a colony of 8R2A
-0.0
+0.2
-3.0
-0.7
-0.3
RCH2 grown on a colony of N2F3
+0.5
-0.0
-4.1
+0.1
+0.1
stress
Neomycin 0.004 mg/ml
-0.6
+0.1
-3.0
+0.1
-0.0
stress
Nickel (II) chloride 1 mM
-0.1
-0.0
-2.6
+0.3
-0.0
stress
Nalidixic 0.00390625 mg/ml
+0.0
-0.4
-1.4
-0.8
+0.2
stress
Vanillin 2 mM
-0.2
+0.2
-1.9
-0.5
-0.1
radiation
Ionizing radiation, 0 Gy
+0.0
-0.2
-1.8
-0.1
-0.1
stress
Def Lomefloxacin 0.00004 mM
-0.2
-0.1
-1.5
-0.3
+0.0
nitrogen source
L-Valine (N)
+0.1
+0.1
-1.8
-0.5
+0.2
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
-1.9
+0.0
-0.1
stress
Choline Lysine 20 mM
+0.1
+0.1
-1.5
-0.5
-0.0
nitrogen source
L-Isoleucine (N)
+0.2
-0.2
-1.8
+0.1
+0.0
stress
Spectinomycin 0.00625 mg/ml
+0.3
-0.1
-2.0
+0.2
+0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
+0.2
-1.4
-0.6
+0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.1
+0.2
-1.2
-0.6
+0.1
vitamin
With vitamins t2
-0.1
+0.2
-1.7
+0.1
+0.1
stress
acetate 80 mM
-0.1
-0.1
-1.7
+0.4
+0.2
stress
A22 0.002 mg/ml
+0.3
+0.1
-1.1
-0.7
+0.1
stress
nitrate 200 mM
-0.3
-0.0
-1.4
+0.3
+0.2
stress
Phosphomycin 0.012 mg/ml
+0.3
+0.2
-1.3
+0.2
+0.2
stress
Nickel (II) chloride 0.9 mM
+0.5
+0.1
-1.0
+0.4
+0.3
metal limitation
Lactate-nitrite; anaerobic; sample1
-0.5
-0.1
+1.4
-0.2
+0.1
stress
Cisplatin 0.003 mg/ml
+0.2
-0.2
+1.4
-0.4
-0.0
stress
Choline chloride 90 mM
-0.0
+0.2
+1.4
-0.5
+0.1
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
-0.0
-0.0
+1.6
-0.4
+0.2
RCH2 grown on a colony of N2C3
-0.0
-0.2
+1.7
-0.1
-0.1
stress
Thallium(I) acetate 0.1 mg/ml
+0.6
-0.0
+1.4
-0.4
+0.0
stress
Lactate-nitrate; anaerobic sample1
-0.1
-0.2
+2.0
-0.1
+0.0
stress
nitrate 200 mM
+0.3
+0.4
+1.2
+0.4
+0.4
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