Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3013 and Psest_3014 are separated by 124 nucleotidesPsest_3014 and Psest_3015 overlap by 4 nucleotidesPsest_3015 and Psest_3016 are separated by 46 nucleotidesPsest_3016 and Psest_3017 are separated by 479 nucleotides Psest_3013: Psest_3013 - cobyrinic acid a,c-diamide synthase, at 3,200,903 to 3,202,195 _3013 Psest_3014: Psest_3014 - cob(I)alamin adenosyltransferase, at 3,202,320 to 3,202,931 _3014 Psest_3015: Psest_3015 - hypothetical protein, at 3,202,928 to 3,203,497 _3015 Psest_3016: Psest_3016 - TonB-dependent vitamin B12 receptor, at 3,203,544 to 3,205,397 _3016 Psest_3017: Psest_3017 - Predicted phosphohydrolases, at 3,205,877 to 3,206,680 _3017
Group Condition Psest_3013 Psest_3014 Psest_3015 Psest_3016 Psest_3017
stress Nickel (II) chloride 1 mM -2.0 -1.9 -0.0 -0.2 -0.1
stress acetate 80 mM -1.1 -2.3 -0.2 +0.3 -0.3
carbon source Glycerol (C) -1.3 -1.1 -0.2 -0.2 -0.2
RCH2 grown on a colony of Serratia -0.5 -1.8 -0.1 -0.6 -0.0
nitrogen source L-Isoleucine (N) -2.0 +0.1 -0.4 -0.6 -0.2
stress Vanillin 2 mM -1.6 -1.3 +0.3 -0.2 -0.1
stress syringaldehyde 3 mM -0.2 -1.9 -0.3 -0.5 +0.5
nutrient L-tyrosine +0.3 -2.3 -0.2 +0.1 -0.3
stress Def Cephalothin 0.08 mg/ml -2.5 +0.0 -0.2 +0.2 +0.2
anaerobic Nitrate/ lactate media with Nitrate 250mM +0.6 -1.6 -0.1 -0.0 -1.0
stress Furfuryl Alcohol 0.05 vol% +0.2 -1.4 +0.3 -0.8 -0.4
stress Def Fusidic 0.064 mg/ml -2.0 +0.5 -0.2 -0.3 +0.1
stress Nickel (II) chloride 0.75 mM +0.9 -1.7 -0.2 -0.1 -0.6
stress Def 2-Furfuraldehyde 0.032 vol% -1.2 +0.7 -0.9 -0.2 -0.0
stress nitrate 250 mM +0.4 -1.6 -0.8 +0.6 +0.2
carbon source butyrate (C) -0.3 +1.0 -0.7 -0.9 -0.1
stress Def Carbenicillin 0.008 mg/ml +1.2 -0.2 -0.9 -0.3 -0.7
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.9 -1.6 +0.5 +0.2 +0.4
stress Gentamicin 0.0016 mg/ml +1.5 +0.1 -0.8 -0.5 +0.2
vitamin No vitamins t1 -0.6 +1.9 -0.4 -0.1 -0.2
stress Cephalothin 0.04 mg/ml +2.1 -1.0 -0.9 +0.3 +0.1
RCH2 grown on a colony of N2F3 -0.2 +0.2 +1.2 +1.0 -0.5
RCH2 grown on a colony of N2A2 +1.6 -1.0 +0.4 +0.3 +0.5
RCH2 grown on a colony of N2C3 +0.8 -0.0 +1.0 +1.1 -0.5
carbon source L-tyrosine (C) +1.1 -1.2 +1.1 +1.7 -0.1
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample1 +0.9 +1.1 +0.5 +0.4 +0.2
stress Lactate-nitrate; anaerobic; dichromate stress sample1 +0.4 +1.9 +0.3 +0.2 +0.3
temperature LB 30C timecourse2 timepoint 2 +1.2 +1.8 +0.4 +0.1 +0.1
carbon source propionate (C) +0.1 +2.9 +0.6 -0.3 +0.7
carbon source L-tyrosine (C) +2.3 -0.3 +1.2 +2.0 -0.4
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