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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3013 and Psest_3014 are separated by 124 nucleotides
Psest_3014 and Psest_3015 overlap by 4 nucleotides
Psest_3015 and Psest_3016 are separated by 46 nucleotides
Psest_3016 and Psest_3017 are separated by 479 nucleotides
Psest_3013: Psest_3013 - cobyrinic acid a,c-diamide synthase, at 3,200,903 to 3,202,195
_3013
Psest_3014: Psest_3014 - cob(I)alamin adenosyltransferase, at 3,202,320 to 3,202,931
_3014
Psest_3015: Psest_3015 - hypothetical protein, at 3,202,928 to 3,203,497
_3015
Psest_3016: Psest_3016 - TonB-dependent vitamin B12 receptor, at 3,203,544 to 3,205,397
_3016
Psest_3017: Psest_3017 - Predicted phosphohydrolases, at 3,205,877 to 3,206,680
_3017
Group
Condition
Psest
_3013
Psest
_3014
Psest
_3015
Psest
_3016
Psest
_3017
stress
Nickel (II) chloride 1 mM
-2.0
-1.9
-0.0
-0.2
-0.1
stress
acetate 80 mM
-1.1
-2.3
-0.2
+0.3
-0.3
carbon source
Glycerol (C)
-1.3
-1.1
-0.2
-0.2
-0.2
RCH2 grown on a colony of Serratia
-0.5
-1.8
-0.1
-0.6
-0.0
nitrogen source
L-Isoleucine (N)
-2.0
+0.1
-0.4
-0.6
-0.2
stress
Vanillin 2 mM
-1.6
-1.3
+0.3
-0.2
-0.1
stress
syringaldehyde 3 mM
-0.2
-1.9
-0.3
-0.5
+0.5
nutrient
L-tyrosine
+0.3
-2.3
-0.2
+0.1
-0.3
stress
Def Cephalothin 0.08 mg/ml
-2.5
+0.0
-0.2
+0.2
+0.2
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.6
-1.6
-0.1
-0.0
-1.0
stress
Furfuryl Alcohol 0.05 vol%
+0.2
-1.4
+0.3
-0.8
-0.4
stress
Def Fusidic 0.064 mg/ml
-2.0
+0.5
-0.2
-0.3
+0.1
stress
Nickel (II) chloride 0.75 mM
+0.9
-1.7
-0.2
-0.1
-0.6
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.2
+0.7
-0.9
-0.2
-0.0
stress
nitrate 250 mM
+0.4
-1.6
-0.8
+0.6
+0.2
carbon source
butyrate (C)
-0.3
+1.0
-0.7
-0.9
-0.1
stress
Def Carbenicillin 0.008 mg/ml
+1.2
-0.2
-0.9
-0.3
-0.7
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.9
-1.6
+0.5
+0.2
+0.4
stress
Gentamicin 0.0016 mg/ml
+1.5
+0.1
-0.8
-0.5
+0.2
vitamin
No vitamins t1
-0.6
+1.9
-0.4
-0.1
-0.2
stress
Cephalothin 0.04 mg/ml
+2.1
-1.0
-0.9
+0.3
+0.1
RCH2 grown on a colony of N2F3
-0.2
+0.2
+1.2
+1.0
-0.5
RCH2 grown on a colony of N2A2
+1.6
-1.0
+0.4
+0.3
+0.5
RCH2 grown on a colony of N2C3
+0.8
-0.0
+1.0
+1.1
-0.5
carbon source
L-tyrosine (C)
+1.1
-1.2
+1.1
+1.7
-0.1
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample1
+0.9
+1.1
+0.5
+0.4
+0.2
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
+0.4
+1.9
+0.3
+0.2
+0.3
temperature
LB 30C timecourse2 timepoint 2
+1.2
+1.8
+0.4
+0.1
+0.1
carbon source
propionate (C)
+0.1
+2.9
+0.6
-0.3
+0.7
carbon source
L-tyrosine (C)
+2.3
-0.3
+1.2
+2.0
-0.4
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