Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3011 and Psest_3012 overlap by 4 nucleotidesPsest_3012 and Psest_3013 overlap by 4 nucleotidesPsest_3013 and Psest_3014 are separated by 124 nucleotidesPsest_3014 and Psest_3015 overlap by 4 nucleotides Psest_3011: Psest_3011 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 3,199,462 to 3,200,262 _3011 Psest_3012: Psest_3012 - cob(II)yrinic acid a,c-diamide reductase, at 3,200,259 to 3,200,906 _3012 Psest_3013: Psest_3013 - cobyrinic acid a,c-diamide synthase, at 3,200,903 to 3,202,195 _3013 Psest_3014: Psest_3014 - cob(I)alamin adenosyltransferase, at 3,202,320 to 3,202,931 _3014 Psest_3015: Psest_3015 - hypothetical protein, at 3,202,928 to 3,203,497 _3015
Group Condition Psest_3011 Psest_3012 Psest_3013 Psest_3014 Psest_3015
lb LB N.D. -1.3 -0.2 -1.7 -0.6
stress acetate 80 mM N.D. -0.0 -1.1 -2.3 -0.2
nitrogen source L-Isoleucine (N) N.D. -1.2 -2.0 +0.1 -0.4
stress Nickel (II) chloride 1 mM N.D. +0.6 -2.0 -1.9 -0.0
nutrient L-tyrosine N.D. -1.1 +0.2 -1.7 -0.3
stress Vanillin 2 mM N.D. -0.3 -1.6 -1.3 +0.3
stress Def Cephalothin 0.08 mg/ml N.D. -0.2 -2.5 +0.0 -0.2
stress Def Fusidic 0.064 mg/ml N.D. -1.1 -2.0 +0.5 -0.2
nutrient L-tyrosine N.D. -0.5 +0.3 -2.3 -0.2
carbon source Glycerol (C) N.D. +0.3 -1.3 -1.1 -0.2
nitrogen source Parabanic Acid (N) N.D. -0.9 -1.3 +0.4 -0.3
stress nitrate 250 mM N.D. +0.1 +0.4 -1.6 -0.8
stress Def 2-Furfuraldehyde 0.032 vol% N.D. -0.2 -1.2 +0.7 -0.9
stress Nickel (II) chloride 0.75 mM N.D. -0.1 +0.9 -1.7 -0.2
vitamin No vitamins t2 N.D. -0.7 -1.0 +1.2 -0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 N.D. +0.1 +0.9 -1.6 +0.5
RCH2 grown on a colony of N2A2 N.D. -0.4 +1.6 -1.0 +0.4
vitamin No vitamins t1 N.D. -0.1 -0.6 +1.9 -0.4
stress Cephalothin 0.04 mg/ml N.D. +0.7 +2.1 -1.0 -0.9
stress Polymyxin B sulfate 0.0001 mg/ml N.D. +0.9 +1.2 -0.3 -0.6
stress Gentamicin 0.0016 mg/ml N.D. +0.6 +1.5 +0.1 -0.8
carbon source L-tyrosine (C) N.D. +0.7 +1.1 -1.2 +1.1
stress Def Chloride 400 mM N.D. +1.2 +1.1 +0.2 -0.4
stress Def Thallium(I) acetate 0.125 mg/ml N.D. +1.3 +1.7 -0.1 -0.2
metal limitation Lactate-nitrite with YE; anaerobic; sample2 N.D. +0.3 +0.9 +1.4 +0.2
stress Lactate-nitrate; anaerobic; uranyl acetate stress sample1 N.D. +0.4 +0.9 +1.1 +0.5
stress Lactate-nitrate; anaerobic; dichromate stress sample1 N.D. +0.4 +0.4 +1.9 +0.3
carbon source L-tyrosine (C) N.D. +0.3 +2.3 -0.3 +1.2
temperature LB 30C timecourse2 timepoint 2 N.D. +0.7 +1.2 +1.8 +0.4
carbon source propionate (C) N.D. +0.7 +0.1 +2.9 +0.6
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