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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3011 and Psest_3012 overlap by 4 nucleotides
Psest_3012 and Psest_3013 overlap by 4 nucleotides
Psest_3013 and Psest_3014 are separated by 124 nucleotides
Psest_3014 and Psest_3015 overlap by 4 nucleotides
Psest_3011: Psest_3011 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 3,199,462 to 3,200,262
_3011
Psest_3012: Psest_3012 - cob(II)yrinic acid a,c-diamide reductase, at 3,200,259 to 3,200,906
_3012
Psest_3013: Psest_3013 - cobyrinic acid a,c-diamide synthase, at 3,200,903 to 3,202,195
_3013
Psest_3014: Psest_3014 - cob(I)alamin adenosyltransferase, at 3,202,320 to 3,202,931
_3014
Psest_3015: Psest_3015 - hypothetical protein, at 3,202,928 to 3,203,497
_3015
Group
Condition
Psest
_3011
Psest
_3012
Psest
_3013
Psest
_3014
Psest
_3015
lb
LB
N.D.
-1.3
-0.2
-1.7
-0.6
stress
acetate 80 mM
N.D.
-0.0
-1.1
-2.3
-0.2
nitrogen source
L-Isoleucine (N)
N.D.
-1.2
-2.0
+0.1
-0.4
stress
Nickel (II) chloride 1 mM
N.D.
+0.6
-2.0
-1.9
-0.0
nutrient
L-tyrosine
N.D.
-1.1
+0.2
-1.7
-0.3
stress
Vanillin 2 mM
N.D.
-0.3
-1.6
-1.3
+0.3
stress
Def Cephalothin 0.08 mg/ml
N.D.
-0.2
-2.5
+0.0
-0.2
stress
Def Fusidic 0.064 mg/ml
N.D.
-1.1
-2.0
+0.5
-0.2
nutrient
L-tyrosine
N.D.
-0.5
+0.3
-2.3
-0.2
carbon source
Glycerol (C)
N.D.
+0.3
-1.3
-1.1
-0.2
nitrogen source
Parabanic Acid (N)
N.D.
-0.9
-1.3
+0.4
-0.3
stress
nitrate 250 mM
N.D.
+0.1
+0.4
-1.6
-0.8
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
-0.2
-1.2
+0.7
-0.9
stress
Nickel (II) chloride 0.75 mM
N.D.
-0.1
+0.9
-1.7
-0.2
vitamin
No vitamins t2
N.D.
-0.7
-1.0
+1.2
-0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
+0.1
+0.9
-1.6
+0.5
RCH2 grown on a colony of N2A2
N.D.
-0.4
+1.6
-1.0
+0.4
vitamin
No vitamins t1
N.D.
-0.1
-0.6
+1.9
-0.4
stress
Cephalothin 0.04 mg/ml
N.D.
+0.7
+2.1
-1.0
-0.9
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
+0.9
+1.2
-0.3
-0.6
stress
Gentamicin 0.0016 mg/ml
N.D.
+0.6
+1.5
+0.1
-0.8
carbon source
L-tyrosine (C)
N.D.
+0.7
+1.1
-1.2
+1.1
stress
Def Chloride 400 mM
N.D.
+1.2
+1.1
+0.2
-0.4
stress
Def Thallium(I) acetate 0.125 mg/ml
N.D.
+1.3
+1.7
-0.1
-0.2
metal limitation
Lactate-nitrite with YE; anaerobic; sample2
N.D.
+0.3
+0.9
+1.4
+0.2
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample1
N.D.
+0.4
+0.9
+1.1
+0.5
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
N.D.
+0.4
+0.4
+1.9
+0.3
carbon source
L-tyrosine (C)
N.D.
+0.3
+2.3
-0.3
+1.2
temperature
LB 30C timecourse2 timepoint 2
N.D.
+0.7
+1.2
+1.8
+0.4
carbon source
propionate (C)
N.D.
+0.7
+0.1
+2.9
+0.6
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