Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_2972 and Psest_2973 are separated by 36 nucleotidesPsest_2973 and Psest_2974 are separated by 58 nucleotidesPsest_2974 and Psest_2975 are separated by 92 nucleotidesPsest_2975 and Psest_2976 are separated by 258 nucleotides Psest_2972: Psest_2972 - flagellar biosynthesis anti-sigma factor FlgM, at 3,167,191 to 3,167,520 _2972 Psest_2973: Psest_2973 - Flagellar biosynthesis/type III secretory pathway chaperone, at 3,167,557 to 3,168,027 _2973 Psest_2974: Psest_2974 - Predicted glycosyltransferase, at 3,168,086 to 3,168,832 _2974 Psest_2975: Psest_2975 - tRNA_Arg_CCT, at 3,168,925 to 3,169,001 _2975 Psest_2976: Psest_2976 - hypothetical protein, at 3,169,260 to 3,169,472 _2976
Group Condition Psest_2972 Psest_2973 Psest_2974 Psest_2975 Psest_2976
carbon source L-tyrosine (C) N.D. -0.6 +0.4 -3.3 -1.9
stress Chlorate 75 mM N.D. +0.0 +0.2 -3.2 -1.7
stress Def Carbenicillin 0.008 mg/ml N.D. +0.4 -0.9 -3.6 -0.1
temperature Glucose defined 30C timecourse1 timepoint 3 N.D. -0.1 -0.4 -3.0 -0.4
temperature Glucose defined media 37C sample1 N.D. -0.3 -0.2 -2.9 -0.4
vitamin With vitamins t2 N.D. +2.5 -0.7 -5.0 -0.6
stress Lactate-nitrate; anaerobic; copper stress sample2 N.D. -0.3 -0.1 -2.8 -0.4
stress 1-ethyl-3-methylimidazolium acetate 40 mM N.D. +0.1 +0.3 -2.8 -0.9
stress Lactate-nitrate; anaerobic; copper stress sample1 N.D. -0.2 -0.7 -2.1 -0.3
stress nitrate 250 mM N.D. +0.5 +0.0 -4.0 +0.4
lb LB N.D. -0.8 -0.5 -1.6 +0.5
stress Neomycin 0.004 mg/ml N.D. +0.7 -0.2 -2.5 +0.0
metal limitation Lactate-nitrite; anaerobic; sample3 N.D. -0.9 -0.4 +1.1 -0.9
stress Bacitracin 0.25 mg/ml N.D. +1.8 -0.8 +0.7 -2.5
vitamin With vitamins t1 N.D. +2.9 -0.8 -1.4 -0.4
nutrient L-Histidine N.D. +2.8 -0.0 -1.8 -0.6
radiation Ionizing radiation, 319.06 Gy, N.D. -0.6 +0.8 -1.4 +1.7
stress Bacitracin 0.25 mg/ml N.D. +1.8 -0.6 +0.2 -0.8
nitrogen source L-Glutamic (N) N.D. +1.4 +0.3 -1.8 +1.0
nutrient Min media with glucose N.D. +2.9 -0.6 -0.8 +0.0
stress Vancomycin 0.016 mg/ml N.D. +2.3 -0.8 +0.9 -0.5
stress Cephalothin 0.04 mg/ml N.D. +1.6 -0.7 -0.5 +1.6
carbon source D-Gluconic Acid (C) N.D. +1.4 +0.1 -0.5 +1.3
vitamin No vitamins t2 N.D. +3.7 -0.0 -1.6 +0.7
nutrient L-Histidine N.D. +3.5 +0.2 -1.4 +0.5
vitamin No vitamins t1 N.D. +3.7 +0.2 -1.4 +0.4
nutrient Min media with glucose N.D. +4.0 +0.4 -0.7 -0.0
carbon source butyrate (C) N.D. +1.9 -0.0 +0.4 +1.4
nutrient L-tyrosine N.D. +4.5 +0.1 +0.0 -0.4
nutrient L-tyrosine N.D. +4.4 +0.2 +0.0 +0.8
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