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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2957 and Psest_2958 are separated by 120 nucleotides
Psest_2958 and Psest_2959 are separated by 12 nucleotides
Psest_2959 and Psest_2960 are separated by 3 nucleotides
Psest_2960 and Psest_2961 are separated by 10 nucleotides
Psest_2957: Psest_2957 - competence protein ComEA helix-hairpin-helix repeat region, at 3,152,509 to 3,152,823
_2957
Psest_2958: Psest_2958 - flagellar hook-associated protein 3, at 3,152,944 to 3,154,212
_2958
Psest_2959: Psest_2959 - flagellar hook-associated protein FlgK, at 3,154,225 to 3,156,240
_2959
Psest_2960: Psest_2960 - flagellar rod assembly protein/muramidase FlgJ, at 3,156,244 to 3,157,416
_2960
Psest_2961: Psest_2961 - Flagellar basal-body P-ring protein, at 3,157,427 to 3,158,527
_2961
Group
Condition
Psest
_2957
Psest
_2958
Psest
_2959
Psest
_2960
Psest
_2961
carbon source
L-Proline (C)
-0.2
-1.6
-1.8
-1.6
-1.7
carbon source
L-Proline (C)
-0.1
-1.5
-1.4
-1.5
-1.6
carbon source
L-Proline (C)
+0.2
-1.5
-1.6
-1.5
-1.6
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.5
-0.9
-0.6
-0.5
-1.8
carbon source
butyrate (C)
+0.1
+1.4
+1.8
+0.3
-1.2
carbon source
D-Gluconic Acid (C)
-1.0
+0.9
+0.8
+0.3
+1.6
carbon source
D-Gluconic Acid (C)
-0.8
+0.7
+0.7
+1.1
+1.0
carbon source
L-Glutamine (C)
-0.9
+1.5
+1.6
+0.5
+1.2
nitrogen source
L-Isoleucine (N)
+0.7
+0.9
+1.3
+0.8
+0.5
carbon source
L-Glutamine (C)
-0.1
+1.5
+1.6
+0.5
+0.8
carbon source
RCH2 defined media
+0.3
+0.9
+0.8
+1.0
+1.3
carbon source
L-Glutamine (C)
-0.2
+1.4
+1.5
+0.6
+1.3
carbon source
Ethanol (C)
-0.4
+1.4
+1.6
+1.2
+1.0
carbon source
Ethanol (C)
-0.1
+1.4
+1.4
+1.0
+1.3
stress
Vancomycin 0.016 mg/ml
-0.0
+1.6
+1.6
+0.9
+1.0
stress
Cephalothin 0.04 mg/ml
+0.2
+1.4
+1.6
+1.4
+0.9
stress
Gentamicin 0.0016 mg/ml
+0.1
+1.4
+1.6
+1.2
+1.4
stress
Vancomycin 0.016 mg/ml
-0.2
+1.9
+1.8
+1.5
+1.8
stress
Bacitracin 0.25 mg/ml
-0.3
+2.1
+2.0
+2.3
+1.6
stress
Bacitracin 0.25 mg/ml
+0.5
+2.1
+2.0
+2.2
+2.0
nutrient
L-Histidine
+0.1
+3.2
+3.0
+3.3
+3.4
vitamin
With vitamins t2
-0.0
+2.8
+3.3
+3.1
+4.0
nutrient
Min media with glucose
+0.1
+3.3
+3.7
+3.3
+3.3
vitamin
With vitamins t1
+0.1
+3.1
+3.6
+3.2
+4.0
vitamin
No vitamins t1
+0.3
+3.2
+3.4
+3.6
+4.4
nutrient
L-Histidine
-0.3
+3.7
+3.7
+4.1
+3.8
vitamin
No vitamins t2
+0.1
+3.2
+3.4
+3.7
+4.7
nutrient
Min media with glucose
-0.4
+3.8
+4.1
+4.2
+5.5
nutrient
L-tyrosine
+0.0
+4.2
+4.2
+4.9
+5.5
nutrient
L-tyrosine
+0.3
+4.4
+4.5
+4.9
+4.8
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