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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2955 and Psest_2956 are separated by 157 nucleotides
Psest_2956 and Psest_2957 are separated by 353 nucleotides
Psest_2957 and Psest_2958 are separated by 120 nucleotides
Psest_2958 and Psest_2959 are separated by 12 nucleotides
Psest_2955: Psest_2955 - Predicted transcriptional regulator with C-terminal CBS domains, at 3,151,216 to 3,151,545
_2955
Psest_2956: Psest_2956 - Uncharacterized conserved protein, at 3,151,703 to 3,152,155
_2956
Psest_2957: Psest_2957 - competence protein ComEA helix-hairpin-helix repeat region, at 3,152,509 to 3,152,823
_2957
Psest_2958: Psest_2958 - flagellar hook-associated protein 3, at 3,152,944 to 3,154,212
_2958
Psest_2959: Psest_2959 - flagellar hook-associated protein FlgK, at 3,154,225 to 3,156,240
_2959
Group
Condition
Psest
_2955
Psest
_2956
Psest
_2957
Psest
_2958
Psest
_2959
carbon source
L-Proline (C)
-1.0
-0.2
-0.1
-1.5
-1.4
carbon source
L-Proline (C)
+0.2
+0.1
-0.2
-1.6
-1.8
carbon source
L-Proline (C)
+0.3
-0.4
+0.2
-1.5
-1.6
stress
Def Benzethonium chloride 0.008 mM
+0.4
-0.0
+0.4
-1.7
-0.8
stress
nitrate 250 mM
-1.8
+0.1
+0.6
+0.2
+0.6
carbon source
D-Gluconic Acid (C)
+0.2
-0.3
-1.0
+0.9
+0.8
nitrogen source
L-Glutamic (N)
+0.8
-0.3
-0.6
+0.9
+0.6
carbon source
L-Glutamine (C)
-0.2
-0.1
-0.9
+1.5
+1.6
carbon source
Ethanol (C)
+0.1
-0.2
-0.4
+1.4
+1.6
stress
Vancomycin 0.016 mg/ml
-0.5
-0.3
-0.0
+1.6
+1.6
carbon source
Ethanol (C)
-0.4
+0.1
-0.1
+1.4
+1.4
carbon source
L-Glutamine (C)
-0.3
+0.1
-0.2
+1.4
+1.5
stress
Gentamicin 0.0016 mg/ml
+0.2
-0.7
+0.1
+1.4
+1.6
carbon source
L-Glutamine (C)
+0.1
-0.3
-0.1
+1.5
+1.6
nitrogen source
L-Isoleucine (N)
+0.6
-0.2
+0.7
+0.9
+1.3
stress
Cephalothin 0.04 mg/ml
+0.4
-0.1
+0.2
+1.4
+1.6
stress
Vancomycin 0.016 mg/ml
-0.2
+0.4
-0.2
+1.9
+1.8
carbon source
butyrate (C)
+0.8
-0.2
+0.1
+1.4
+1.8
stress
Bacitracin 0.25 mg/ml
+0.9
+0.2
-0.3
+2.1
+2.0
stress
Bacitracin 0.25 mg/ml
+0.6
+0.1
+0.5
+2.1
+2.0
nutrient
L-Histidine
+0.0
-0.3
+0.1
+3.2
+3.0
vitamin
With vitamins t2
+0.8
-0.7
-0.0
+2.8
+3.3
vitamin
With vitamins t1
+0.3
-0.5
+0.1
+3.1
+3.6
nutrient
L-Histidine
-0.2
-0.1
-0.3
+3.7
+3.7
vitamin
No vitamins t2
+0.5
-0.3
+0.1
+3.2
+3.4
vitamin
No vitamins t1
+0.3
+0.0
+0.3
+3.2
+3.4
nutrient
Min media with glucose
+0.7
-0.6
+0.1
+3.3
+3.7
nutrient
Min media with glucose
+0.5
-0.3
-0.4
+3.8
+4.1
nutrient
L-tyrosine
-0.1
+0.1
+0.0
+4.2
+4.2
nutrient
L-tyrosine
+0.3
-0.2
+0.3
+4.4
+4.5
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