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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2940 and Psest_2941 are separated by 203 nucleotides
Psest_2941 and Psest_2942 overlap by 8 nucleotides
Psest_2942 and Psest_2943 are separated by 92 nucleotides
Psest_2943 and Psest_2944 are separated by 52 nucleotides
Psest_2940: Psest_2940 - Predicted membrane protein, at 3,137,946 to 3,138,170
_2940
Psest_2941: Psest_2941 - hypothetical protein, at 3,138,374 to 3,139,666
_2941
Psest_2942: Psest_2942 - Surface lipoprotein, at 3,139,659 to 3,140,426
_2942
Psest_2943: Psest_2943 - Pirin-related protein, at 3,140,519 to 3,141,361
_2943
Psest_2944: Psest_2944 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 3,141,414 to 3,142,355
_2944
Group
Condition
Psest
_2940
Psest
_2941
Psest
_2942
Psest
_2943
Psest
_2944
temperature
LB 30C timecourse1 timepoint 3
-0.1
-0.2
-0.4
-0.3
-6.9
stress
Gentamicin 0.0016 mg/ml
-0.4
-0.3
-0.2
-0.3
-5.0
temperature
LB 30C timecourse1 timepoint 2
-0.1
-0.2
-0.3
-0.3
-4.7
lb
LB
-0.0
-0.3
-0.1
-0.0
-4.4
temperature
LB 26C sample1
-0.1
-0.0
-0.1
-0.2
-4.0
lb
LB
-0.2
-0.2
-0.0
-0.1
-3.5
temperature
Glucose defined 30C timecourse1 timepoint 3
-0.1
-0.2
-0.3
-0.1
-3.0
temperature
LB 30C timecourse2 timepoint 1
-0.4
-0.3
-0.5
-0.2
-2.3
stress
nitrate 250 mM
-0.6
-0.5
+0.1
-0.0
-2.4
lb
LB
-0.0
+0.0
-0.1
+0.0
-3.3
stress
Def Neomycin 0.0008 mg/ml
-0.4
+0.2
-0.0
-0.0
-3.1
temperature
Glucose defined media 37C sample1
+0.1
-0.1
-0.1
-0.0
-2.9
temperature
LB 30C timecourse2 timepoint 2
+0.6
+0.1
-0.2
-0.3
-3.1
stress
Def Doxycycline hyclate 0.0002 mg/ml
+0.3
-0.1
-0.1
-0.0
-2.6
lb
LB
+0.2
-0.2
+0.3
+0.1
-2.9
carbon source
L-Leucine (C)
-1.1
+0.1
+0.4
+0.0
-1.7
stress
Def Tetracycline 0.0004 mg/ml
+0.4
+0.3
+0.1
+0.0
-2.3
RCH2 grown on a colony of ecoli
-1.8
-0.3
-0.3
-0.0
+1.4
RCH2 grown on a colony of Serratia
-2.7
+0.4
+0.1
+0.4
+1.5
RCH2 grown on a colony of Serratia
-1.5
+0.7
-0.8
+0.1
+1.5
stress
Nalidixic 0.00390625 mg/ml
-1.5
+0.2
-0.4
+0.1
+1.6
stress
Nalidixic 0.00390625 mg/ml
-1.0
+0.4
-0.0
-0.4
+1.4
RCH2 grown on a colony of N2F3
-0.4
-0.5
-0.3
+0.2
+1.6
carbon source
propionate (C)
-1.0
-0.0
-0.0
-0.4
+2.2
carbon source
Ethanol (C)
-1.6
+0.7
+0.9
+0.2
+0.7
carbon source
butyrate (C)
-0.3
-0.2
-0.1
-0.3
+2.5
carbon source
Ethanol (C)
-1.0
+0.7
+1.2
+0.1
+1.5
stress
nitrate 200 mM
+1.5
+0.3
+0.7
+0.1
+0.4
stress
Furfuryl Alcohol 0.05 vol%
-0.1
+0.1
-0.3
+0.1
+3.2
nitrogen source
L-Alanine (N)
+0.1
-0.2
+0.1
+0.1
+3.5
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