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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2929 and Psest_2930 are separated by 64 nucleotides
Psest_2930 and Psest_2931 are separated by 136 nucleotides
Psest_2931 and Psest_2932 are separated by 119 nucleotides
Psest_2932 and Psest_2933 are separated by 199 nucleotides
Psest_2929: Psest_2929 - Transcriptional regulators, at 3,123,998 to 3,124,471
_2929
Psest_2930: Psest_2930 - asparagine synthase (glutamine-hydrolyzing), at 3,124,536 to 3,126,419
_2930
Psest_2931: Psest_2931 - GNAT-family acetyltransferase TIGR03103, at 3,126,556 to 3,128,295
_2931
Psest_2932: Psest_2932 - hydrolase, peptidase M42 family, at 3,128,415 to 3,129,620
_2932
Psest_2933: Psest_2933 - Signal transduction histidine kinase, at 3,129,820 to 3,132,564
_2933
Group
Condition
Psest
_2929
Psest
_2930
Psest
_2931
Psest
_2932
Psest
_2933
stress
sodium fluoride 6.25 mM
N.D.
-0.4
-0.3
-0.0
-2.2
stress
nitrate 250 mM
N.D.
-0.5
-0.2
+0.1
-2.0
temperature
LB 30C timecourse1 timepoint 3
N.D.
-0.2
-0.2
-0.2
-1.9
stress
5-Hydroxymethylfurfural 5 mM
N.D.
-0.4
-0.2
-0.5
-1.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
+0.0
+0.1
+0.5
-3.0
stress
Gentamicin 0.0016 mg/ml
N.D.
+0.1
-0.2
+0.1
-2.0
stress
Lactate-nitrate; anaerobic; copper stress sample1
N.D.
+0.0
-0.1
-0.2
-1.5
stress
Fusidic 0.016 mg/ml
N.D.
-0.1
-0.0
-0.2
-1.5
stress
Nalidixic 0.001 mg/ml
N.D.
-0.2
-0.2
-0.2
-1.2
stress
Chlorate 75 mM
N.D.
-0.6
-0.1
-0.2
-0.7
anaerobic
nitrate reduction - anaerobic
N.D.
-0.1
-0.0
+0.2
-1.5
carbon source
casaminos (C)
N.D.
-0.3
+0.0
-0.2
-1.1
stress
Lactate-nitrate; anaerobic; copper stress sample3
N.D.
+0.0
+0.1
-0.1
-1.4
RCH2 grown on a colony of 8R2A
N.D.
-0.2
-0.1
-0.0
-1.0
stress
Chloride 200 mM
N.D.
-0.4
-0.3
-0.0
-0.6
stress
Paraquat dichloride 0.015 mg/ml
N.D.
-0.4
+0.0
+0.0
-1.0
RCH2 grown on a colony of Serratia
N.D.
-0.1
+0.1
-0.7
-0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
-0.3
+0.1
-0.4
-0.5
stress
Cephalothin 0.04 mg/ml
N.D.
-0.0
+0.2
+0.4
-1.7
stress
Lactate-nitrate; anaerobic; nickel stress sample1
N.D.
+0.1
-0.0
-0.2
-0.9
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
+0.2
-0.2
-0.5
-0.5
stress
methylglyoxal 0.0016 vol%
N.D.
-0.1
-0.2
+0.3
-0.9
stress
Def Carbenicillin 0.008 mg/ml
N.D.
+0.1
-0.1
+0.1
-1.0
temperature
LB 30C timecourse2 timepoint 1
N.D.
-0.0
+0.2
+0.0
-1.0
RCH2 grown on a colony of N2F3
N.D.
-0.3
-0.3
-0.6
+0.4
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
-0.0
+0.2
+0.5
-1.3
RCH2 grown on a colony of ecoli
N.D.
-0.2
+0.4
-0.3
-0.4
stress
Def Benzethonium chloride 0.008 mM
N.D.
+0.0
-0.0
+0.5
-0.8
anaerobic
Nitrate/ lactate media with Nitrate 20mM
N.D.
+0.3
-0.0
+0.2
-0.8
stress
Lactate-nitrate; anaerobic; copper stress sample2
N.D.
+0.3
+0.2
+0.0
-0.7
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