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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2869 and Psest_2870 are separated by 106 nucleotides
Psest_2870 and Psest_2871 are separated by 101 nucleotides
Psest_2871 and Psest_2872 are separated by 3 nucleotides
Psest_2872 and Psest_2873 are separated by 83 nucleotides
Psest_2869: Psest_2869 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 3,059,739 to 3,061,148
_2869
Psest_2870: Psest_2870 - TIGR00730 family protein, at 3,061,255 to 3,062,346
_2870
Psest_2871: Psest_2871 - Uncharacterized protein conserved in bacteria, at 3,062,448 to 3,062,912
_2871
Psest_2872: Psest_2872 - protein RecA, at 3,062,916 to 3,063,959
_2872
Psest_2873: Psest_2873 - competence/damage-inducible protein CinA C-terminal domain, at 3,064,043 to 3,064,540
_2873
Group
Condition
Psest
_2869
Psest
_2870
Psest
_2871
Psest
_2872
Psest
_2873
temperature
LB 30C timecourse1 timepoint 3
+0.0
-0.1
N.D.
-4.5
-0.3
stress
Nalidixic 0.001 mg/ml
+0.1
+0.1
N.D.
-4.4
-0.1
stress
Def Nalidixic 0.001 mg/ml
-0.1
-0.5
N.D.
-3.5
-0.1
stress
Def Nalidixic 0.0005 mg/ml
-0.0
-0.5
N.D.
-3.5
-0.1
stress
Furfuryl Alcohol 0.2 vol%
-0.0
-0.8
N.D.
-3.4
+0.1
lb
LB
-0.0
+0.0
N.D.
-4.0
-0.1
stress
Def Cisplatin 0.0002 mg/ml
-0.0
-0.1
N.D.
-4.1
+0.1
stress
Chloride 200 mM
-0.0
-0.5
N.D.
-3.5
-0.1
lb
LB
-0.1
-0.1
N.D.
-3.7
-0.2
stress
nitrate 250 mM
-1.1
-0.1
N.D.
-1.7
-1.0
stress
Nickel (II) chloride 0.75 mM
+0.0
-0.1
N.D.
-4.1
+0.2
stress
Cisplatin 0.0016 mg/ml
-0.1
-0.3
N.D.
-3.3
-0.1
temperature
LB 26C sample1
+0.0
+0.3
N.D.
-4.3
+0.3
stress
Choline Lysine 20 mM
+0.2
-0.9
N.D.
-3.2
+0.2
stress
Def methylglyoxal 0.01 vol%
-0.2
-0.1
N.D.
-3.4
+0.0
stress
Cobalt chloride 0.07 mM
-0.3
-0.2
N.D.
-3.1
-0.1
stress
Cobalt chloride 0.05 mM
-0.1
-0.5
N.D.
-3.7
+0.6
stress
Cobalt chloride 0.06 mM
-0.4
-0.1
N.D.
-3.2
+0.2
stress
nitrite 2.5 mM
-0.0
+0.1
N.D.
-3.8
+0.1
stress
nitrate 200 mM
-0.7
+0.4
N.D.
-3.2
+0.0
stress
Cisplatin 0.003 mg/ml
-0.2
-0.7
N.D.
-2.9
+0.5
stress
Gentamicin 0.0016 mg/ml
-0.1
-0.7
N.D.
-2.9
+0.3
stress
Cobalt chloride 0.07 mM
-0.3
-0.1
N.D.
-3.1
+0.2
stress
Cholin acetate 40 mM
-0.3
+0.2
N.D.
-3.5
+0.4
stress
Cephalothin 0.04 mg/ml
-0.4
-0.4
N.D.
-2.6
+0.4
stress
Nickel (II) chloride 0.8 mM
-0.3
-0.4
N.D.
-2.8
+0.5
carbon source
L-Isoleucine (C)
-0.1
+0.3
N.D.
-3.3
+0.1
stress
sodium fluoride 6.25 mM
-0.0
+0.5
N.D.
-3.0
-0.4
RCH2 grown on a colony of N2F3
-0.4
+1.0
N.D.
-1.8
-1.1
RCH2 grown on a colony of ecoli
+0.9
+0.4
N.D.
-1.9
-1.3
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