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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2855 and Psest_2856 are separated by 135 nucleotides
Psest_2856 and Psest_2857 are separated by 112 nucleotides
Psest_2857 and Psest_2858 are separated by 86 nucleotides
Psest_2858 and Psest_2859 are separated by 58 nucleotides
Psest_2855: Psest_2855 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,045,658 to 3,046,284
_2855
Psest_2856: Psest_2856 - Beta-lactamase class C and other penicillin binding proteins, at 3,046,420 to 3,047,568
_2856
Psest_2857: Psest_2857 - Rad3-related DNA helicases, at 3,047,681 to 3,049,825
_2857
Psest_2858: Psest_2858 - Predicted integral membrane protein, at 3,049,912 to 3,050,376
_2858
Psest_2859: Psest_2859 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,050,435 to 3,051,073
_2859
Group
Condition
Psest
_2855
Psest
_2856
Psest
_2857
Psest
_2858
Psest
_2859
stress
Def Cephalothin 0.08 mg/ml
-5.4
-0.1
-0.0
-0.1
+0.1
stress
Aluminum chloride 0.3 mM
-4.5
+0.0
+0.0
-0.1
-0.4
stress
L-Lysine 200 mM
-3.1
-0.2
-0.4
-0.2
-0.3
stress
Zinc 0.12 mM
-3.5
-0.2
-0.1
+0.1
-0.3
stress
syringaldehyde 3 mM
-3.7
-0.3
+0.1
+0.0
+0.1
stress
Def Neomycin 0.0008 mg/ml
-3.7
+0.2
-0.2
+0.1
-0.0
stress
Vanillin 2 mM
-1.9
-0.0
-0.3
-0.4
-0.5
stress
Nickel (II) chloride 0.9 mM
-2.6
-0.1
-0.0
-0.3
+0.0
stress
Thallium(I) acetate 0.1 mg/ml
-2.9
-0.1
-0.1
+0.1
+0.0
stress
L-Lysine 200 mM
-2.5
-0.3
+0.0
+0.1
+0.2
stress
Thallium(I) acetate 0.08 mg/ml
-2.5
+0.0
-0.1
-0.1
+0.2
stress
Def Lomefloxacin 0.00004 mM
-1.7
+0.1
-0.6
-0.2
+0.0
stress
methylglyoxal 0.0016 vol%
+0.3
-0.1
-2.5
-0.1
-0.1
stress
Def Vancomycin 0.016 mg/ml
-2.3
+0.0
-0.1
-0.0
+0.1
stress
Aluminum chloride 0.3 mM
-1.7
-0.3
-0.4
+0.1
+0.1
stress
D-Cycloserine 0.032 mg/ml
-2.1
-0.2
+0.4
-0.3
-0.0
stress
Choline chloride 90 mM
-1.8
+0.1
-0.5
+0.2
-0.1
stress
Doxycycline hyclate 0.0002 mg/ml
-1.7
+0.2
+0.1
-0.4
+0.3
stress
Chlorate 75 mM
-1.3
-0.3
+0.4
-0.7
+0.3
carbon source
propionate (C)
-1.6
+0.2
+0.4
+0.0
-0.4
stress
Furfuryl Alcohol 0.2 vol%
-2.1
-0.1
+0.3
+0.3
+0.2
stress
Cephalothin 0.04 mg/ml
-2.7
-0.1
+0.1
+0.5
+0.9
stress
Lomefloxacin 0.0001 mM
+1.2
-0.1
-1.2
+0.1
-0.3
stress
Nalidixic 0.00390625 mg/ml
-0.1
+0.2
+2.3
-0.5
-0.5
lb
LB
+1.5
+0.1
+0.5
-0.0
-0.4
stress
Bacitracin 0.25 mg/ml
+2.2
+0.1
-0.3
-0.2
+0.0
stress
Nalidixic 0.00390625 mg/ml
+0.6
+0.0
+1.7
+0.1
-0.2
stress
Def Nalidixic 0.001 mg/ml
+0.4
+0.1
+1.5
-0.1
+0.4
metal limitation
Lactate; aerobic; with copper, sample2
+2.4
+0.1
+0.1
-0.1
-0.0
stress
Lactate-nitrate; anaerobic; nickel stress sample1
+3.3
+0.0
+0.1
-0.0
-0.4
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