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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2813 and Psest_2814 are separated by 38 nucleotides
Psest_2814 and Psest_2815 are separated by 172 nucleotides
Psest_2815 and Psest_2816 are separated by 88 nucleotides
Psest_2816 and Psest_2817 are separated by 154 nucleotides
Psest_2813: Psest_2813 - Predicted transcriptional regulators, at 3,001,550 to 3,001,852
_2813
Psest_2814: Psest_2814 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 3,001,891 to 3,002,940
_2814
Psest_2815: Psest_2815 - S-formylglutathione hydrolase, at 3,003,113 to 3,003,958
_2815
Psest_2816: Psest_2816 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 3,004,047 to 3,005,162
_2816
Psest_2817: Psest_2817 - Transcriptional regulator, at 3,005,317 to 3,006,216
_2817
Group
Condition
Psest
_2813
Psest
_2814
Psest
_2815
Psest
_2816
Psest
_2817
carbon source
L-tyrosine (C)
+0.4
-0.2
-2.8
-0.6
-0.2
carbon source
L-tyrosine (C)
-0.5
-0.0
-1.2
-1.0
-0.6
stress
Furfuryl Alcohol 0.3 vol%
-0.3
-1.3
-1.2
-0.1
+0.0
stress
Furfuryl Alcohol 0.2 vol%
-0.6
-1.1
-0.3
-0.4
+0.1
stress
Furfuryl Alcohol 0.05 vol%
+0.5
-1.2
-1.0
-0.4
-0.0
stress
Def Carbenicillin 0.02 mg/ml
-0.4
-0.2
-0.4
-0.4
-0.4
stress
Carbenicillin 0.008 mg/ml
-0.7
-0.6
+0.1
-0.2
-0.1
stress
Benzethonium chloride 0.0125 mM
-0.2
-0.7
-0.2
-0.4
-0.1
stress
Def Cephalothin 0.08 mg/ml
-0.5
-0.3
-0.3
-0.2
-0.3
temperature
LB 30C timecourse1 timepoint 3
-0.1
-0.2
-0.6
-0.4
-0.3
stress
Chlorate 75 mM
-0.4
-0.1
-0.6
-0.1
-0.2
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.3
-0.3
-0.6
+0.0
-0.2
stress
Bacitracin 0.25 mg/ml
-0.5
-0.4
-0.5
-0.0
+0.0
stress
Cholin acetate 40 mM
-0.6
-0.2
-0.2
-0.1
-0.2
stress
Gentamicin 0.0016 mg/ml
-0.6
-0.0
-0.2
+0.2
-0.5
stress
Def Carbenicillin 0.008 mg/ml
-0.6
-0.1
+0.1
-0.0
-0.6
stress
Nalidixic 0.00390625 mg/ml
-0.6
+0.1
-0.3
+0.2
-0.3
carbon source
propionate (C)
+0.6
-0.2
-0.6
-0.6
+0.0
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
+0.3
+0.1
-0.7
-0.1
-0.2
RCH2 grown on a colony of N2F3
-0.6
+0.5
+0.1
-0.5
-0.1
stress
D-Cycloserine 0.032 mg/ml
+0.2
+0.1
-0.6
-0.1
-0.3
stress
Cephalothin 0.04 mg/ml
-0.6
+0.1
+0.2
+0.3
-0.2
RCH2 grown on a colony of N2F3
+0.1
-0.6
+0.4
+0.3
-0.2
stress
Nalidixic 0.00390625 mg/ml
+0.2
-0.4
+0.6
-0.3
-0.0
nutrient
Min media with glucose
+0.7
-0.2
-0.1
-0.2
-0.0
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.4
-1.1
+0.1
+0.3
+0.4
stress
5-Hydroxymethylfurfural 5 mM
+0.5
-0.1
+0.3
+0.2
-0.4
stress
nitrate 250 mM
-0.1
+0.7
+0.9
+0.5
-0.2
stress
Def Benzethonium chloride 0.008 mM
+0.3
+0.6
+0.2
+0.6
+0.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.3
+0.6
+0.5
+1.3
+0.6
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