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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2800 and Psest_2801 are separated by 84 nucleotides
Psest_2801 and Psest_2802 are separated by 257 nucleotides
Psest_2802 and Psest_2803 are separated by 156 nucleotides
Psest_2803 and Psest_2804 overlap by 58 nucleotides
Psest_2800: Psest_2800 - hypothetical protein, at 2,990,221 to 2,991,012
_2800
Psest_2801: Psest_2801 - hypothetical protein, at 2,991,097 to 2,991,612
_2801
Psest_2802: Psest_2802 - Na+/proline symporter, at 2,991,870 to 2,993,807
_2802
Psest_2803: Psest_2803 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 2,993,964 to 2,994,884
_2803
Psest_2804: Psest_2804 - hypothetical protein, at 2,994,827 to 2,994,964
_2804
Group
Condition
Psest
_2800
Psest
_2801
Psest
_2802
Psest
_2803
Psest
_2804
stress
Benzalkonium Chloride 0.002 mg/ml
-0.3
-0.0
-0.3
-0.9
N.D.
stress
Chlorate 75 mM
+0.1
-1.4
-0.0
-0.1
N.D.
stress
Fusidic 0.016 mg/ml
-0.1
-0.9
-0.0
-0.3
N.D.
stress
Def Carbenicillin 0.008 mg/ml
-0.0
-0.2
-0.2
-0.7
N.D.
stress
Lactate-nitrate; anaerobic sample2
-0.3
-0.5
-0.1
-0.2
N.D.
stress
nitrate 250 mM
+0.2
-0.7
-0.1
-0.5
N.D.
stress
Lactate-nitrate; anaerobic; copper stress sample2
-0.2
-0.8
+0.1
-0.0
N.D.
carbon source
propionate (C)
-0.3
-0.2
+0.1
-0.6
N.D.
RCH2 grown on a colony of Serratia
+0.2
-0.9
-0.3
+0.0
N.D.
stress
Nickel (II) chloride 1 mM
+0.3
-1.0
+0.1
-0.1
N.D.
stress
Cobalt chloride 0.07 mM
+0.3
-0.6
+0.0
-0.3
N.D.
stress
Paraquat dichloride 0.015 mg/ml
+0.1
-0.9
+0.2
+0.2
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.3
+0.5
-0.3
-0.2
N.D.
stress
Thallium(I) acetate 0.08 mg/ml
-0.5
+0.5
-0.3
+0.1
N.D.
nitrogen source
nitrite (N)
+0.2
-0.6
-0.1
+0.2
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
+0.5
+0.1
-0.3
N.D.
stress
Vancomycin 0.016 mg/ml
-0.0
+0.7
-0.1
-0.4
N.D.
stress
benzoic 0.4 mg/ml
-0.1
+0.7
-0.3
+0.1
N.D.
nitrogen source
L-Isoleucine (N)
+0.5
-0.4
+0.3
+0.0
N.D.
carbon source
L-tyrosine (C)
+0.0
-0.5
+0.3
+0.6
N.D.
stress
2-Furfuraldehyde 0.05 vol%
+0.5
+0.2
-0.3
+0.2
N.D.
stress
Nickel (II) chloride 0.9 mM
+0.3
+0.4
+0.1
-0.2
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.4
+0.4
+0.3
-0.3
N.D.
stress
syringaldehyde 3 mM
+0.2
+0.5
-0.2
+0.3
N.D.
nitrogen source
L-Glutamic (N)
-0.1
+0.7
+0.0
+0.4
N.D.
stress
Phosphomycin 0.012 mg/ml
+0.2
+0.5
+0.3
+0.3
N.D.
stress
2-Furfuraldehyde 0.05 vol%
+0.7
+0.5
+0.1
+0.0
N.D.
carbon source
L-tyrosine (C)
+0.4
+0.2
+0.5
+0.6
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
+0.9
+0.1
+0.5
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.8
+0.7
+0.2
-0.1
N.D.
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