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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2798 and Psest_2799 are separated by 223 nucleotides
Psest_2799 and Psest_2800 are separated by 3 nucleotides
Psest_2800 and Psest_2801 are separated by 84 nucleotides
Psest_2801 and Psest_2802 are separated by 257 nucleotides
Psest_2798: Psest_2798 - Truncated hemoglobins, at 2,989,005 to 2,989,445
_2798
Psest_2799: Psest_2799 - Xanthosine triphosphate pyrophosphatase, at 2,989,669 to 2,990,217
_2799
Psest_2800: Psest_2800 - hypothetical protein, at 2,990,221 to 2,991,012
_2800
Psest_2801: Psest_2801 - hypothetical protein, at 2,991,097 to 2,991,612
_2801
Psest_2802: Psest_2802 - Na+/proline symporter, at 2,991,870 to 2,993,807
_2802
Group
Condition
Psest
_2798
Psest
_2799
Psest
_2800
Psest
_2801
Psest
_2802
metal limitation
Lactate-nitrite with YE; anaerobic; with copper; sample2
-1.4
-0.4
+0.0
-0.6
-0.0
stress
Lactate-nitrate; anaerobic; nickel stress sample2
-1.6
-0.2
-0.3
-0.2
-0.0
stress
Lactate-nitrate; anaerobic; copper stress sample2
-1.2
-0.0
-0.2
-0.8
+0.1
anaerobic
Nitrate/ lactate media with Nitrate 250mM
-1.4
+0.1
-0.2
-0.5
-0.1
stress
Nalidixic 0.00390625 mg/ml
-1.5
-0.3
-0.3
+0.5
-0.3
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.6
-0.2
+0.1
-0.4
+0.2
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-1.2
-0.0
-0.2
-0.3
+0.0
nitrogen source
L-Citrulline (N)
-1.6
-0.1
-0.2
+0.3
-0.1
stress
Chlorate 75 mM
-0.5
+0.2
+0.1
-1.4
-0.0
stress
Benzethonium chloride 0.01 mM
-1.4
-0.2
+0.2
-0.1
+0.0
stress
Doxycycline hyclate 0.0002 mg/ml
-1.3
-0.2
+0.1
+0.2
-0.1
stress
syringaldehyde 4 mM
-0.6
-0.4
+0.2
-0.5
+0.1
carbon source
propionate (C)
-1.2
+0.7
+0.0
-0.5
-0.0
stress
Nickel (II) chloride 1 mM
+0.3
-0.3
+0.3
-1.0
+0.1
carbon source
propionate (C)
-0.9
+0.7
-0.3
-0.2
+0.1
stress
nitrate 250 mM
+0.7
-0.0
+0.2
-0.7
-0.1
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.6
+0.4
-0.3
-0.5
+0.0
stress
Spectinomycin 0.00625 mg/ml
+0.9
+0.1
-0.3
-0.5
+0.1
stress
benzoic 0.4 mg/ml
+0.5
-0.3
-0.1
+0.7
-0.3
stress
Cobalt chloride 0.08 mM
+1.0
-0.1
+0.2
-0.5
-0.1
stress
2-Furfuraldehyde 0.05 vol%
+0.8
-0.5
+0.5
+0.2
-0.3
stress
Paraquat dichloride 0.015 mg/ml
+0.8
+0.5
+0.1
-0.9
+0.2
RCH2 grown on a colony of N2F3
+1.0
-0.2
-0.1
+0.3
-0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.9
-0.3
-0.1
+0.6
-0.0
temperature
LB 30C timecourse2 timepoint 2
+1.2
+0.1
-0.0
-0.3
+0.1
carbon source
butyrate (C)
+1.0
+0.1
+0.5
+0.2
+0.1
stress
Zinc 0.12 mM
+1.1
-0.1
+0.4
+0.5
+0.1
stress
2-Furfuraldehyde 0.05 vol%
+0.6
+0.4
+0.7
+0.5
+0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.9
-0.2
+0.8
+0.7
+0.2
carbon source
L-tyrosine (C)
+2.4
-0.3
+0.4
+0.2
+0.5
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