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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2787 and Psest_2788 are separated by 121 nucleotides
Psest_2788 and Psest_2789 are separated by 34 nucleotides
Psest_2789 and Psest_2790 are separated by 277 nucleotides
Psest_2790 and Psest_2791 are separated by 108 nucleotides
Psest_2787: Psest_2787 - Protein of unknown function (DUF2789)., at 2,980,523 to 2,980,759
_2787
Psest_2788: Psest_2788 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,980,881 to 2,981,813
_2788
Psest_2789: Psest_2789 - Ammonia permease, at 2,981,848 to 2,983,056
_2789
Psest_2790: Psest_2790 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 2,983,334 to 2,984,830
_2790
Psest_2791: Psest_2791 - hypothetical protein, at 2,984,939 to 2,985,136
_2791
Group
Condition
Psest
_2787
Psest
_2788
Psest
_2789
Psest
_2790
Psest
_2791
stress
Def Chloride 400 mM
N.D.
-0.9
-0.8
-0.5
-0.5
stress
Nalidixic 0.00390625 mg/ml
N.D.
+0.0
-0.6
-0.2
-1.2
nitrogen source
L-Glutamic (N)
N.D.
-0.2
-0.8
-0.1
-0.8
stress
Phosphomycin 0.012 mg/ml
N.D.
-0.2
-0.2
-0.1
-1.3
stress
Choline chloride 90 mM
N.D.
-0.1
-0.4
-0.1
-1.1
stress
Cobalt chloride 0.05 mM
N.D.
-0.2
-0.7
-0.1
-0.7
stress
1-ethyl-3-methylimidazolium acetate 20 mM
N.D.
-0.5
-0.4
-0.0
-0.7
stress
Benzethonium chloride 0.01 mM
N.D.
-0.2
-0.2
-0.4
-1.0
stress
Chlorate 75 mM
N.D.
-0.1
-0.6
-0.3
-0.7
stress
benzoic 0.4 mg/ml
N.D.
+0.1
-0.4
-0.1
-1.1
stress
5-Hydroxymethylfurfural 5 mM
N.D.
+0.4
-0.0
-0.1
-1.5
stress
Neomycin 0.004 mg/ml
N.D.
+0.5
-0.2
+0.0
-1.0
stress
Carbenicillin 0.008 mg/ml
N.D.
+0.6
+0.4
-0.3
-1.4
temperature
LB 30C timecourse1 timepoint 3
N.D.
+0.5
-0.4
-0.2
-0.5
carbon source
L-tyrosine (C)
N.D.
-0.4
-0.6
-0.1
+0.5
stress
L-Lysine 200 mM
N.D.
-0.1
+0.5
+0.1
-1.1
stress
Benzethonium chloride 0.0125 mM
N.D.
-0.8
+0.4
+0.1
-0.4
stress
Vancomycin 0.016 mg/ml
N.D.
-0.2
-0.9
+0.2
+0.4
lb
LB
N.D.
-0.2
-0.8
-0.1
+0.6
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.7
-0.3
-0.0
+0.9
carbon source
propionate (C)
N.D.
+0.7
+0.1
+0.1
-0.9
RCH2 grown on a colony of ecoli
N.D.
+0.3
-0.8
+0.4
+0.8
carbon source
propionate (C)
N.D.
+1.5
+0.1
+0.2
-1.1
stress
Benzethonium chloride 0.0125 mM
N.D.
+0.5
-0.4
-0.1
+0.7
stress
Furfuryl Alcohol 0.05 vol%
N.D.
+1.0
+0.2
+0.5
-0.9
vitamin
With vitamins t2
N.D.
-0.4
+0.0
+0.2
+1.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
-0.5
-0.1
+0.2
+1.6
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
-0.4
+0.2
+0.1
+1.4
stress
2-Furfuraldehyde 0.05 vol%
N.D.
+0.4
+0.5
+0.4
+0.8
RCH2 grown on a colony of N2F3
N.D.
+0.3
-0.1
+0.8
+1.2
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