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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2745 and Psest_2746 are separated by 22 nucleotides
Psest_2746 and Psest_2747 are separated by 254 nucleotides
Psest_2747 and Psest_2748 are separated by 69 nucleotides
Psest_2748 and Psest_2749 overlap by 4 nucleotides
Psest_2745: Psest_2745 - Transcriptional regulator, at 2,936,260 to 2,936,943
_2745
Psest_2746: Psest_2746 - Protein of unknown function (DUF2855)., at 2,936,966 to 2,938,069
_2746
Psest_2747: Psest_2747 - Putative NADPH-quinone reductase (modulator of drug activity B), at 2,938,324 to 2,939,106
_2747
Psest_2748: Psest_2748 - Transcriptional regulator, at 2,939,176 to 2,940,081
_2748
Psest_2749: Psest_2749 - Predicted transcriptional regulators, at 2,940,078 to 2,940,461
_2749
Group
Condition
Psest
_2745
Psest
_2746
Psest
_2747
Psest
_2748
Psest
_2749
stress
perchlorate 12.5 mM
-0.2
+0.3
-0.0
-2.8
-0.1
stress
Chlorate 75 mM
-0.4
-0.5
+0.0
-0.7
-0.6
carbon source
propionate (C)
+0.1
-0.4
-0.3
-1.3
-0.1
temperature
LB 26C sample1
-0.1
-0.2
-0.2
-0.9
-0.6
stress
Furfuryl Alcohol 0.3 vol%
-0.2
-0.1
-0.0
-1.1
-0.6
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.2
-0.2
-0.1
-1.1
-0.3
stress
Def Chloride 400 mM
-0.0
-0.2
-0.2
-1.1
-0.4
stress
5-Hydroxymethylfurfural 5 mM
+0.2
-0.0
-0.3
-1.1
-0.5
stress
Vancomycin 0.016 mg/ml
-0.2
-0.3
-0.1
-1.3
+0.2
stress
L-Lysine 200 mM
+0.4
-0.4
+0.4
-2.1
+0.0
nitrogen source
L-Citrulline (N)
+0.2
+0.5
-0.3
-0.9
-0.8
nitrogen source
L-Glutamic (N)
+0.5
-0.3
-0.4
-0.1
-0.9
RCH2 grown on a colony of Serratia
+0.4
-0.3
-0.3
-1.2
+0.3
stress
Choline chloride 90 mM
+0.1
-0.1
+0.5
-1.6
+0.1
RCH2 grown on a colony of N2A2
+0.2
-0.2
+0.2
-1.4
+0.4
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.3
-0.3
-0.1
+0.3
-1.0
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
-0.6
-0.3
-0.2
+0.6
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
-0.9
-0.3
+0.6
+0.0
stress
Nickel (II) chloride 0.9 mM
+0.2
+0.2
+0.5
-0.9
-0.2
nutrient
L-tyrosine
-0.2
+0.5
+0.5
-1.1
+0.3
stress
nitrate 250 mM
-0.4
-0.6
-0.0
+1.0
+0.1
stress
Cobalt chloride 0.07 mM
-0.0
-0.2
+0.6
-0.8
+0.4
stress
A22 0.002 mg/ml
-0.3
-0.1
-0.2
+1.2
-0.5
stress
acetate 80 mM
+0.4
+0.4
+0.3
-0.1
-0.8
stress
Cephalothin 0.04 mg/ml
-0.5
-0.2
+0.3
+1.2
+0.2
stress
Def Benzethonium chloride 0.008 mM
-0.2
-0.2
+0.3
+1.0
+0.4
stress
Def Cephalothin 0.04 mg/ml
-0.2
+0.1
-0.4
+1.6
+0.3
stress
Thallium(I) acetate 0.09 mg/ml
+0.2
-0.3
+0.3
+0.9
+0.4
RCH2 grown on a colony of 8R2A
-0.1
+0.2
-0.4
+1.5
+0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.2
-0.5
-0.2
+2.7
+0.1
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