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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0261 and Psest_0262 are separated by 83 nucleotides
Psest_0262 and Psest_0263 are separated by 185 nucleotides
Psest_0263 and Psest_0264 are separated by 120 nucleotides
Psest_0264 and Psest_0265 are separated by 68 nucleotides
Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510
_0261
Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164
_0262
Psest_0263: Psest_0263 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 279,350 to 281,278
_0263
Psest_0264: Psest_0264 - monofunctional biosynthetic peptidoglycan transglycosylase, at 281,399 to 282,127
_0264
Psest_0265: Psest_0265 - Uncharacterized small membrane protein, at 282,196 to 282,570
_0265
Group
Condition
Psest
_0261
Psest
_0262
Psest
_0263
Psest
_0264
Psest
_0265
stress
Chlorate 75 mM
N.D.
-0.4
-0.4
-0.6
-0.2
stress
Def Polymyxin B sulfate 0.00008 mg/ml
N.D.
-0.5
-1.3
+0.3
+0.2
carbon source
butyrate (C)
N.D.
-2.3
-0.2
+1.3
-0.1
stress
Def Carbenicillin 0.008 mg/ml
N.D.
-0.3
-1.0
+0.3
-0.1
carbon source
L-Lactate (C)
N.D.
-0.4
-0.9
+0.2
+0.1
carbon source
RCH2 defined media
N.D.
-0.4
-1.2
+0.4
+0.3
carbon source
butyrate (C)
N.D.
-1.1
-0.2
+0.4
+0.2
stress
Aluminum chloride 0.3 mM
N.D.
+0.0
-0.3
+0.3
-0.7
stress
nitrate 250 mM
N.D.
-0.6
-0.6
+0.5
+0.2
carbon source
L-Glutamine (C)
N.D.
-0.7
-0.1
+0.3
+0.1
temperature
LB 30C timecourse1 timepoint 3
N.D.
-0.4
-1.0
+0.7
+0.3
stress
Def Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.3
-0.7
+0.4
+0.2
carbon source
butyrate (C)
N.D.
-1.0
-0.1
+0.6
+0.2
carbon source
L-Glutamine (C)
N.D.
-0.7
-0.2
+0.3
+0.3
stress
Cephalothin 0.04 mg/ml
N.D.
-0.4
-0.3
+0.7
-0.1
stress
Gentamicin 0.0016 mg/ml
N.D.
-0.4
-0.1
+0.7
-0.2
stress
Lactate-nitrate; anaerobic; nickel stress sample3
N.D.
-0.1
-1.0
+0.6
+0.5
RCH2 grown on a colony of N2A2
N.D.
+0.0
-0.4
+0.7
-0.2
RCH2 grown on a colony of 8R2A
N.D.
+0.0
+0.6
+0.6
-0.9
anaerobic
nitrate reduction - anaerobic
N.D.
-0.3
-0.2
+0.8
+0.1
stress
Def Benzethonium chloride 0.008 mM
N.D.
-0.1
-0.6
+0.6
+0.5
stress
Dimethyl Sulfoxide 5 vol%
N.D.
-0.0
-0.4
+0.6
+0.4
stress
Fusidic 0.016 mg/ml
N.D.
-0.4
-0.5
+1.2
+0.2
carbon source
L-tyrosine (C)
N.D.
-0.4
-0.1
+0.3
+0.8
nitrogen source
nitrite (N)
N.D.
-0.1
+0.3
+0.8
-0.4
temperature
LB 30C timecourse2 timepoint 1
N.D.
-0.2
-0.4
+0.9
+0.6
stress
Zinc 0.12 mM
N.D.
-0.0
-0.2
+0.2
+1.0
radiation
Ionizing radiation, 0 Gy
N.D.
-0.2
-0.2
+1.1
+0.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
-0.3
-0.2
+1.2
+0.6
nitrogen source
L-Alanine (N)
N.D.
+0.2
+0.2
+0.6
+0.6
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