Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0261 and Psest_0262 are separated by 83 nucleotidesPsest_0262 and Psest_0263 are separated by 185 nucleotidesPsest_0263 and Psest_0264 are separated by 120 nucleotidesPsest_0264 and Psest_0265 are separated by 68 nucleotides Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510 _0261 Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164 _0262 Psest_0263: Psest_0263 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 279,350 to 281,278 _0263 Psest_0264: Psest_0264 - monofunctional biosynthetic peptidoglycan transglycosylase, at 281,399 to 282,127 _0264 Psest_0265: Psest_0265 - Uncharacterized small membrane protein, at 282,196 to 282,570 _0265
Group Condition Psest_0261 Psest_0262 Psest_0263 Psest_0264 Psest_0265
stress Chlorate 75 mM N.D. -0.4 -0.4 -0.6 -0.2
stress Def Polymyxin B sulfate 0.00008 mg/ml N.D. -0.5 -1.3 +0.3 +0.2
carbon source butyrate (C) N.D. -2.3 -0.2 +1.3 -0.1
stress Def Carbenicillin 0.008 mg/ml N.D. -0.3 -1.0 +0.3 -0.1
carbon source L-Lactate (C) N.D. -0.4 -0.9 +0.2 +0.1
carbon source RCH2 defined media N.D. -0.4 -1.2 +0.4 +0.3
carbon source butyrate (C) N.D. -1.1 -0.2 +0.4 +0.2
stress Aluminum chloride 0.3 mM N.D. +0.0 -0.3 +0.3 -0.7
stress nitrate 250 mM N.D. -0.6 -0.6 +0.5 +0.2
carbon source L-Glutamine (C) N.D. -0.7 -0.1 +0.3 +0.1
temperature LB 30C timecourse1 timepoint 3 N.D. -0.4 -1.0 +0.7 +0.3
stress Def Polymyxin B sulfate 0.0001 mg/ml N.D. -0.3 -0.7 +0.4 +0.2
carbon source butyrate (C) N.D. -1.0 -0.1 +0.6 +0.2
carbon source L-Glutamine (C) N.D. -0.7 -0.2 +0.3 +0.3
stress Cephalothin 0.04 mg/ml N.D. -0.4 -0.3 +0.7 -0.1
stress Gentamicin 0.0016 mg/ml N.D. -0.4 -0.1 +0.7 -0.2
stress Lactate-nitrate; anaerobic; nickel stress sample3 N.D. -0.1 -1.0 +0.6 +0.5
RCH2 grown on a colony of N2A2 N.D. +0.0 -0.4 +0.7 -0.2
RCH2 grown on a colony of 8R2A N.D. +0.0 +0.6 +0.6 -0.9
anaerobic nitrate reduction - anaerobic N.D. -0.3 -0.2 +0.8 +0.1
stress Def Benzethonium chloride 0.008 mM N.D. -0.1 -0.6 +0.6 +0.5
stress Dimethyl Sulfoxide 5 vol% N.D. -0.0 -0.4 +0.6 +0.4
stress Fusidic 0.016 mg/ml N.D. -0.4 -0.5 +1.2 +0.2
carbon source L-tyrosine (C) N.D. -0.4 -0.1 +0.3 +0.8
nitrogen source nitrite (N) N.D. -0.1 +0.3 +0.8 -0.4
temperature LB 30C timecourse2 timepoint 1 N.D. -0.2 -0.4 +0.9 +0.6
stress Zinc 0.12 mM N.D. -0.0 -0.2 +0.2 +1.0
radiation Ionizing radiation, 0 Gy N.D. -0.2 -0.2 +1.1 +0.4
stress Def Benzalkonium Chloride 0.002 mg/ml N.D. -0.3 -0.2 +1.2 +0.6
nitrogen source L-Alanine (N) N.D. +0.2 +0.2 +0.6 +0.6
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