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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_0260 and Psest_0261 are separated by 112 nucleotides
Psest_0261 and Psest_0262 are separated by 83 nucleotides
Psest_0262 and Psest_0263 are separated by 185 nucleotides
Psest_0263 and Psest_0264 are separated by 120 nucleotides
Psest_0260: Psest_0260 - Cell division protein, at 274,524 to 275,543
_0260
Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510
_0261
Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164
_0262
Psest_0263: Psest_0263 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 279,350 to 281,278
_0263
Psest_0264: Psest_0264 - monofunctional biosynthetic peptidoglycan transglycosylase, at 281,399 to 282,127
_0264
Group
Condition
Psest
_0260
Psest
_0261
Psest
_0262
Psest
_0263
Psest
_0264
stress
Def Carbenicillin 0.02 mg/ml
-3.9
N.D.
-0.1
-0.8
+0.1
stress
Furfuryl Alcohol 0.05 vol%
-3.3
N.D.
+0.1
-0.6
-0.4
stress
Gentamicin 0.0016 mg/ml
-4.2
N.D.
-0.4
-0.1
+0.7
carbon source
L-tyrosine (C)
-3.6
N.D.
-0.4
-0.1
+0.3
stress
Choline Lysine 20 mM
-3.4
N.D.
-0.1
+0.1
-0.2
stress
Carbenicillin 0.0065 mg/ml
-3.4
N.D.
+0.1
+0.3
-0.4
lb
LB
-3.4
N.D.
-0.0
+0.0
+0.1
stress
Def Benzethonium chloride 0.008 mM
-3.2
N.D.
-0.1
-0.6
+0.6
nutrient
Min media with glucose
-2.7
N.D.
-0.1
-0.1
-0.3
stress
Chlorate 75 mM
-1.6
N.D.
-0.4
-0.4
-0.6
stress
Vancomycin 0.016 mg/ml
-3.1
N.D.
-0.0
+0.2
+0.0
stress
Nickel (II) chloride 0.9 mM
-2.7
N.D.
+0.1
-0.0
-0.1
stress
Choline chloride 90 mM
-2.5
N.D.
+0.0
-0.2
+0.1
stress
Cisplatin 0.003 mg/ml
-2.1
N.D.
+0.1
-0.3
-0.3
nutrient
L-tyrosine
-2.2
N.D.
-0.0
-0.0
-0.1
stress
Cobalt chloride 0.05 mM
-2.4
N.D.
-0.1
+0.1
+0.1
carbon source
RCH2 defined media
-1.0
N.D.
-0.4
-1.2
+0.4
stress
nitrate 250 mM
-1.2
N.D.
-0.6
-0.6
+0.5
stress
D-Cycloserine 0.032 mg/ml
-1.9
N.D.
+0.2
+0.3
-0.3
stress
Cephalothin 0.04 mg/ml
-1.7
N.D.
-0.4
-0.3
+0.7
stress
Carbenicillin 0.008 mg/ml
-1.7
N.D.
+0.3
+0.2
-0.4
temperature
LB 30C timecourse1 timepoint 3
-0.9
N.D.
-0.4
-1.0
+0.7
temperature
LB 30C timecourse2 timepoint 1
-1.8
N.D.
-0.2
-0.4
+0.9
stress
Carbenicillin 0.008 mg/ml
-1.6
N.D.
+0.2
+0.3
-0.4
nitrogen source
L-Alanine (N)
-1.9
N.D.
+0.2
+0.2
+0.6
carbon source
butyrate (C)
+0.7
N.D.
-2.3
-0.2
+1.3
stress
Fusidic 0.016 mg/ml
-0.5
N.D.
-0.4
-0.5
+1.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.0
N.D.
-0.3
-0.2
+1.2
carbon source
L-tyrosine (C)
+3.6
N.D.
-0.3
+0.1
-0.4
RCH2 grown on a colony of N2C3
+3.1
N.D.
+0.1
+0.6
-0.1
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